View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14803_low_6 (Length: 441)
Name: NF14803_low_6
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14803_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 24 - 309
Target Start/End: Original strand, 4809589 - 4809874
Alignment:
| Q |
24 |
agtatggttaataaggagaatttgagacataattaatgctgtcagtttggaagttaatgctaatgcaaatgagaacataaagagttctctgaggcaacat |
123 |
Q |
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| T |
4809589 |
agtatggttaataaggagaatttgagacataattaatgctgtcagtttggaagttaatgctaatgcaaatgagaacataaagagtcctctgaggcaacat |
4809688 |
T |
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| Q |
124 |
gagaccatgttagaaagcacaagatcatggagatgaatattcatcttatatgtaaaataagtttgagaacttgatagagataaatactcataagagaaat |
223 |
Q |
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| T |
4809689 |
gagaccatgttagaaagcacaagatcatggagatgaatattcatcttatatgtaaaataagtttgagaacttgatagagataaatactcataagagaaat |
4809788 |
T |
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| Q |
224 |
ttaagaaacattcaccaatatgtgatagtagcatgttaattaaataacaaaacattagtgaaagagtctctaatttacgcttattt |
309 |
Q |
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| T |
4809789 |
ttaagaaacattcaccaatatgtgatagtagcatgttaattaaataacaaaacattagtgaaagagtctctaatttacgcttattt |
4809874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 426
Target Start/End: Original strand, 4809886 - 4809948
Alignment:
| Q |
364 |
tcttttccactcaagatgaaaatgnnnnnnnagacatagaaatgatttctagagagtactata |
426 |
Q |
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| T |
4809886 |
tctttttcactcaagatgaaaatgtttttttagatatagaaatgatttctagagagtactata |
4809948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 4816919 - 4816951
Alignment:
| Q |
70 |
ttggaagttaatgctaatgcaaatgagaacata |
102 |
Q |
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| T |
4816919 |
ttggaagttactgctaatgcaaatgagaacata |
4816951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 27511103 - 27511197
Alignment:
| Q |
23 |
cagtatggttaataaggagaatttgagacataattaatgctgtcagtttggaagttaatgctaatgcaaatgagaacataaagagttctctgaggcaac |
121 |
Q |
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| T |
27511103 |
cagtatggtttataaggagaatttgaggc----ttattgctgtcagtttggaagttactgctaatgcaaatgagaacataaagagtcctttgaggcaac |
27511197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 25219358 - 25219290
Alignment:
| Q |
131 |
tgttagaaagcacaagatcatggagatgaatattcatcttatatgtaaaataagtttgagaacttgata |
199 |
Q |
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| T |
25219358 |
tgttataaatcacatgatcaaagagatgaatattcatctcatatttgaaataagtttgagagcttgata |
25219290 |
T |
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