View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14803_low_8 (Length: 427)
Name: NF14803_low_8
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14803_low_8 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 27512202 - 27511781
Alignment:
| Q |
18 |
ctctcaaagtctctccatcgccccatcgtttgttctctccttcgccccttcgccttttacgcttaccgctattttaaatccaatccccatcaccttcgcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27512202 |
ctctcaaagtctctccatcgccccatcgtttgttctctccttcgccccttcgccttttacgcttaccgctattttaaatccaatccccatcaccttcgcc |
27512103 |
T |
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| Q |
118 |
ccgttgcctcttccgcttacagctcttttaacaccaacaccatgccccctctccttcgccctgtagtcgcctcttcttcttctagtgcttaccgctcttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27512102 |
ccgttgcctcttccgcttacagctcttttaacaccaacgccatgccccctctccttcgccctgtagtcgcctcttcttcttctagtgcttaccgctcttc |
27512003 |
T |
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| Q |
218 |
taacaccaagacggtcgacgatc------------gctcgttccctcatataaatatgtatccccactcactctcctctattaccgtcccgtctgccggt |
305 |
Q |
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|||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27512002 |
taaccccaagacagtcgccgatcgtctctccgatagctcgttccctcatataaatatgtatccccactcactctcctctcttaccgtcccgtctgccggt |
27511903 |
T |
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| Q |
306 |
cacatctcaaagtctctccttctccccatcgtcttttctctccttcgctccatcaccctttcctctcttactgtctcctccgccaatctcatctcaaagt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27511902 |
cacatctcaaagtctctccttctccccatcgtcttttctctccttcgctccatcgccctttcctctcttactgtcttctccgccaatctcatctcaaagt |
27511803 |
T |
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| Q |
406 |
ctttccttcgccccatcgcccc |
427 |
Q |
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| T |
27511802 |
ctttccttcgccccatcgcccc |
27511781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 27512210 - 27512158
Alignment:
| Q |
301 |
ccggtcacatctcaaagtctctccttctccccatcgtcttttctctccttcgc |
353 |
Q |
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|||||| | ||||||||||||||| || ||||||||| | ||||||||||||| |
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| T |
27512210 |
ccggtctcctctcaaagtctctccatcgccccatcgtttgttctctccttcgc |
27512158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 77283 - 77323
Alignment:
| Q |
318 |
tctctccttctccccatcgtcttttctctccttcgctccat |
358 |
Q |
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|||||||||||||||||| | ||||||||| |||||||||| |
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| T |
77283 |
tctctccttctccccatccttttttctctctttcgctccat |
77323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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