View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14803_low_9 (Length: 422)
Name: NF14803_low_9
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14803_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 23640179 - 23640568
Alignment:
| Q |
19 |
gaaagagggtggtgcagttgttggaacggggaacacgccaccagatccatgtgtacataaagtttatttggactaggagggggagaggaaggtggtggct |
118 |
Q |
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| T |
23640179 |
gaaagagggtggtgcagttgttggaacggggaacacgccaccagatccatgtgtacataaagtttatttggactaggagggggagaggaaggtggtggct |
23640278 |
T |
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| Q |
119 |
tggaggaagtttgtagtgagaggtgagagcaaatacaattatttttaggtgtaaacaactatattctattaataaacttcaattttattagcatatatga |
218 |
Q |
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| T |
23640279 |
tggaggaagtttgtagtgagaggtgagagcaaatataattatttttaggtgtaaacaactatattctattaataaacttcaattttattagcatatatga |
23640378 |
T |
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| Q |
219 |
actactatacctcataagctacaagcaaagaaccaccgtatatgtcattttttgtgatattttcaaagccctgaggagcctggacaaaggcaatttcatg |
318 |
Q |
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| T |
23640379 |
actactatacctcataagctacaagcaaagaaccaccgtatatgtcattttttgtgatattttcaaagccctgaggagtctgcacaaaggcaatttcatg |
23640478 |
T |
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| Q |
319 |
tcccttctcttcatccatgaagaagcaaagtgcatctcttattgattgagaattgtttgagtacatgtcacaatctacattcagaattat |
408 |
Q |
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| T |
23640479 |
tcccttctcttcatccatgaagaagcaaagtgcatctcttattgattgagaattgtttgagtacatgtcacaatctacattcagaattat |
23640568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 245 - 408
Target Start/End: Original strand, 23627795 - 23627958
Alignment:
| Q |
245 |
aaagaaccaccgtatatgtcattttttgtgatattttcaaagccctgaggagcctggacaaaggcaatttcatgtcccttctcttcatccatgaagaagc |
344 |
Q |
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| T |
23627795 |
aaagaaccaccgtatatgtcattttttgtgatattttcaaagccctgaggagcctgcacaaaggcaatttcatgtcccttctcttcatccatgaagaagc |
23627894 |
T |
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| Q |
345 |
aaagtgcatctcttattgattgagaattgtttgagtacatgtcacaatctacattcagaattat |
408 |
Q |
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| T |
23627895 |
aaagtgcatctcttattgattgagaattgtttgagtacatgtcacaatctacattcagaattat |
23627958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 277 - 405
Target Start/End: Original strand, 23654354 - 23654482
Alignment:
| Q |
277 |
attttcaaagccctgaggagcctggacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattgagaattgttt |
376 |
Q |
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| T |
23654354 |
attttcaaaggcctgtggagactgcacaaaagcaatttcatggcctttctcttcatccatgaaataacagagagaatctcttatagattctgaattgttt |
23654453 |
T |
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| Q |
377 |
gagtacatgtcacaatctacattcagaat |
405 |
Q |
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| T |
23654454 |
gagtacatgtcacaatctacatttagaat |
23654482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 27185265 - 27185218
Alignment:
| Q |
93 |
aggagggggagaggaaggtggtggcttggaggaagtttgtagtgagag |
140 |
Q |
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| T |
27185265 |
aggaagggaagaggaaggtggtggcttggtggaagtttgtagagagag |
27185218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 27834807 - 27834760
Alignment:
| Q |
93 |
aggagggggagaggaaggtggtggcttggaggaagtttgtagtgagag |
140 |
Q |
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| T |
27834807 |
aggaagggaagaggaaggtggtggcttggtggaagtttgtagagagag |
27834760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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