View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14804_high_3 (Length: 207)

Name: NF14804_high_3
Description: NF14804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14804_high_3
NF14804_high_3
[»] chr5 (2 HSPs)
chr5 (134-174)||(12199361-12199401)
chr5 (1-42)||(37371303-37371344)
[»] chr1 (2 HSPs)
chr1 (1-42)||(27115327-27115368)
chr1 (5-42)||(47511613-47511650)
[»] chr7 (1 HSPs)
chr7 (5-42)||(33229093-33229130)
[»] chr4 (1 HSPs)
chr4 (1-42)||(36645246-36645286)


Alignment Details
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 12199361 - 12199401
Alignment:
Q  134 catgtgcggcacaaattaacatgacagatctttaataacac 174  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12199361 catgtgcggcacaaattaacatgacagatctttaataacac 12199401  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37371344 - 37371303
Alignment:
Q  1 atactataacactattttgttctaatgagtcaaatgtaaaaa 42  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  37371344 atactataacacttttttcttctaatgagtcaaatgtaaaaa 37371303  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27115327 - 27115368
Alignment:
Q  1 atactataacactattttgttctaatgagtcaaatgtaaaaa 42  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  27115327 atactataacactttttttttctaatgagtcaaatgtaaaaa 27115368  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 47511650 - 47511613
Alignment:
Q  5 tataacactattttgttctaatgagtcaaatgtaaaaa 42  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  47511650 tataacactttttttttctaatgagtcaaatgtaaaaa 47511613  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 33229130 - 33229093
Alignment:
Q  5 tataacactattttgttctaatgagtcaaatgtaaaaa 42  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  33229130 tataacactttttttttctaatgagtcaaatgtaaaaa 33229093  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36645246 - 36645286
Alignment:
Q  1 atactataacactattttgttctaatgagtcaaatgtaaaaa 42  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  36645246 atactataacactttttt-ttctaatgagtcaaatgtaaaaa 36645286  T

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