View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14804_low_1 (Length: 374)

Name: NF14804_low_1
Description: NF14804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14804_low_1
NF14804_low_1
[»] chr6 (25 HSPs)
chr6 (1-355)||(26617040-26617401)
chr6 (1-355)||(26722968-26723329)
chr6 (6-161)||(26811431-26811586)
chr6 (4-149)||(26949595-26949740)
chr6 (31-149)||(27214351-27214469)
chr6 (31-149)||(27234759-27234877)
chr6 (6-149)||(26848594-26848737)
chr6 (1-146)||(25071596-25071741)
chr6 (4-149)||(26635624-26635769)
chr6 (4-149)||(26741590-26741735)
chr6 (1-149)||(26974986-26975134)
chr6 (4-211)||(27665225-27665432)
chr6 (4-149)||(26959099-26959245)
chr6 (3-75)||(24715590-24715662)
chr6 (58-116)||(28491682-28491740)
chr6 (58-116)||(29804092-29804150)
chr6 (45-146)||(28781076-28781177)
chr6 (58-149)||(29679704-29679795)
chr6 (303-351)||(26974758-26974804)
chr6 (45-146)||(27698643-27698744)
chr6 (45-146)||(27718528-27718629)
chr6 (45-146)||(27724994-27725095)
chr6 (59-140)||(28098532-28098613)
chr6 (45-146)||(28786215-28786316)
chr6 (45-146)||(28792336-28792437)
[»] chr2 (1 HSPs)
chr2 (7-209)||(17993795-17993997)
[»] scaffold1254 (1 HSPs)
scaffold1254 (45-146)||(66-167)
[»] scaffold0419 (1 HSPs)
scaffold0419 (45-146)||(7462-7563)
[»] scaffold0277 (1 HSPs)
scaffold0277 (45-146)||(13781-13882)
[»] scaffold0349 (2 HSPs)
scaffold0349 (45-146)||(3571-3672)
scaffold0349 (45-146)||(14504-14605)
[»] scaffold0012 (1 HSPs)
scaffold0012 (4-131)||(241789-241916)
[»] chr1 (1 HSPs)
chr1 (13-104)||(5924474-5924565)


Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 26617401 - 26617040
Alignment:
Q  1 tctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  26617401 tctttagagaagacaacaatggcaattcttgagttttcaatgc-------gagcgaaggtgtgatttcatcacctctctgaagctccttgtcatcaatga 26617309  T
Q  101 aggttcggactcctttttcacaaagagctttatagagattgccggtgaagccc--gatcgagtatcagccccccgaaaactgacgaacgcatcgaagctg 198  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  26617308 aggttcggactcctttgtcacaaagagctttatagagattgccggtgaagcccgagatcgagtatcagccccccgaaaactgacgaacgcatcgaagctg 26617209  T
Q  199 aaatcataagagat------------ggaagaaggagattgcatagccatgaaaagaaaatgatagtgagagtactttggagaaacaagaaaataaacta 286  Q
    ||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617208 aaatcataagagatagaagaagaggaggaagaaggagattgcatagccatgaaaagaaaatgatagtgagagtactttggagaaacaagaaaataaacta 26617109  T
Q  287 agaaataagtttcacctaagagttatttacgagtgtccatttatttaacattagtggcgaaactttctt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617108 agaaataagtttcacctaagagttatttacgagtgtccatttatttaacattagtggcgaaactttctt 26617040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 26723329 - 26722968
Alignment:
Q  1 tctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  26723329 tctttagagaagacaacaatggcaattcttgagttttcaatgc-------gagcgaaggtgtgatttcatcacctctctgaagctccttgtcatcaatga 26723237  T
Q  101 aggttcggactcctttttcacaaagagctttatagagattgccggtgaagccc--gatcgagtatcagccccccgaaaactgacgaacgcatcgaagctg 198  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  26723236 aggttcggactcctttgtcacaaagagctttatagagattgccggtgaagcccgagatcgagtatcagccccccgaaaactgacgaacgcatcgaagctg 26723137  T
Q  199 aaatcataagagat------------ggaagaaggagattgcatagccatgaaaagaaaatgatagtgagagtactttggagaaacaagaaaataaacta 286  Q
    ||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26723136 aaatcataagagatagaagaagaggaggaagaaggagattgcatagccatgaaaagaaaatgatagtgagagtactttggagaaacaagaaaataaacta 26723037  T
Q  287 agaaataagtttcacctaagagttatttacgagtgtccatttatttaacattagtggcgaaactttctt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26723036 agaaataagtttcacctaagagttatttacgagtgtccatttatttaacattagtggcgaaactttctt 26722968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 6 - 161
Target Start/End: Complemental strand, 26811586 - 26811431
Alignment:
Q  6 agagaagacaacaatggcaattcttgagttttcaatgctcttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggtt 105  Q
    |||||| |||| ||||||||| || |||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||    
T  26811586 agagaatacaataatggcaatcctagagtgttcaatgctcttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggtt 26811487  T
Q  106 cggactcctttttcacaaagagctttatagagattgccggtgaagcccgatcgagt 161  Q
    |||| |||||| ||||||||||||||||||||||  ||||||||||| ||||||||    
T  26811486 cggattcctttgtcacaaagagctttatagagatgaccggtgaagccagatcgagt 26811431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 26949740 - 26949595
Alignment:
Q  4 ttagagaagacaacaatggcaattcttgagttttcaatgctcttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaagg 103  Q
    ||||| ||||| | |||||||||||| || | |||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||    
T  26949740 ttagaaaagacgataatggcaattctcgattcttcaattctcttgaggagtgaaggtgtgatttcgtcacctttctgaagctccttatcatcaatgaagg 26949641  T
Q  104 ttcggactcctttttcacaaagagctttatagagattgccggtgaa 149  Q
    |||||| ||| || ||| | ||||||||||||||||| ||||||||    
T  26949640 ttcggattcccttgtcagagagagctttatagagattaccggtgaa 26949595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 27214469 - 27214351
Alignment:
Q  31 gagttttcaatgctcttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactcctttttcacaaagagctt 130  Q
    |||| ||||||  ||||| ||||||||| ||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||| |||||||||||||    
T  27214469 gagtcttcaattttcttgtggagcgaagatgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctt 27214370  T
Q  131 tatagagattgccggtgaa 149  Q
    |||||||||| ||||||||    
T  27214369 tatagagattaccggtgaa 27214351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 27234759 - 27234877
Alignment:
Q  31 gagttttcaatgctcttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactcctttttcacaaagagctt 130  Q
    |||| ||||||  ||||| ||||||||| ||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||| |||||||||||||    
T  27234759 gagtcttcaattttcttgtggagcgaagatgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctt 27234858  T
Q  131 tatagagattgccggtgaa 149  Q
    |||||||||| ||||||||    
T  27234859 tatagagattaccggtgaa 27234877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 26848737 - 26848594
Alignment:
Q  6 agagaagacaacaatggcaattcttgagttttcaatgctcttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggtt 105  Q
    |||||| |||| ||||| ||| || |||| ||||||| |||||||||||||||||||||| ||||||||  ||||||| |||||||| ||||||||||||    
T  26848737 agagaatacaagaatggaaatcctcgagtcttcaatgttcttgaggagcgaaggtgtgatctcatcaccactctgaagatccttgtcatcaatgaaggtt 26848638  T
Q  106 cggactcctttttcacaaagagctttatagagattgccggtgaa 149  Q
    |||| ||| || ||| ||||||||||||||||||| || |||||    
T  26848637 cggattccattgtcagaaagagctttatagagattaccagtgaa 26848594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 25071741 - 25071596
Alignment:
Q  1 tctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatga 100  Q
    |||||||||||||| | |||||||||||| || | ||||||||||||| ||||||||||||||||||| |||||| ||| |||||| ||||| ||||| |    
T  25071741 tctttagagaagacgataatggcaattctcgaatcttcaatgctcttgcggagcgaaggtgtgatttcgtcacctctcttaagctctttgtcatcaataa 25071642  T
Q  101 aggttcggactcctttttcacaaagagctttatagagattgccggt 146  Q
    ||||  ||| |||||| ||| ||||||||||||| ||||| |||||    
T  25071641 aggtgtggattcctttgtcagaaagagctttataaagattaccggt 25071596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 26635769 - 26635624
Alignment:
Q  4 ttagagaagacaacaatggcaattcttgagttttcaatgctcttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaagg 103  Q
    |||||||| || | ||||||||| || || | |||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||||||||    
T  26635769 ttagagaaaacgataatggcaatcctcgactcttcaatgctcttgaggagcgaaggtgtgatttcatccccttttttaagctccttgtcatcaatgaagg 26635670  T
Q  104 ttcggactcctttttcacaaagagctttatagagattgccggtgaa 149  Q
    |   || |||||| ||| |||||||||||||||| || ||||||||    
T  26635669 tgttgattcctttgtcagaaagagctttatagaggttaccggtgaa 26635624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 26741735 - 26741590
Alignment:
Q  4 ttagagaagacaacaatggcaattcttgagttttcaatgctcttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaagg 103  Q
    |||||||| || | ||||||||| || || | |||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||||||||    
T  26741735 ttagagaaaacgataatggcaatcctcgactcttcaatgctcttgaggagcgaaggtgtgatttcatccccttttttaagctccttgtcatcaatgaagg 26741636  T
Q  104 ttcggactcctttttcacaaagagctttatagagattgccggtgaa 149  Q
    |   || |||||| ||| |||||||||||||||| || ||||||||    
T  26741635 tgttgattcctttgtcagaaagagctttatagaggttaccggtgaa 26741590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 26975134 - 26974986
Alignment:
Q  1 tctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatga 100  Q
    |||||||||||||| | ||||| ||| || |||| ||||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||    
T  26975134 tctttagagaagacgataatggtaatcctcgagtcttcaatgctcttgaggagcgaaggtgtgatttcgtccccttttttaagctccttgtcatcaatga 26975035  T
Q  101 aggttcggactcctttttcacaaagagctttatagagattgccggtgaa 149  Q
    || |   || |||||| ||| |||||||||||||||| || ||||||||    
T  26975034 agatgttgattcctttgtcagaaagagctttatagaggttaccggtgaa 26974986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 211
Target Start/End: Original strand, 27665225 - 27665432
Alignment:
Q  4 ttagagaagacaacaatggcaattcttgagttttcaatgctcttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaagg 103  Q
    |||||||| | || ||||||||| || || | ||||||||||||  |||| |||||||||||||| |||||  |  ||||||||||||| ||||||||||    
T  27665225 ttagagaatataataatggcaatcctcgattcttcaatgctcttccggagtgaaggtgtgatttcgtcaccagttggaagctccttgtcatcaatgaagg 27665324  T
Q  104 ttcggactcctttttcacaaagagctttatagagattgccggtgaagcccgatcgagtatcagccccccgaaaactgacgaacgcatcgaagctgaaatc 203  Q
    |  ||| |||||| ||| ||||||| |||||||| || |||||||| ||  ||||||| || |  ||||  ||||| | |||| |||||||| |||||||    
T  27665325 tgtggattcctttgtcagaaagagccttatagaggttaccggtgaaaccaaatcgagtgtcggtacccctgaaactaatgaacacatcgaagttgaaatc 27665424  T
Q  204 ataagaga 211  Q
    ||||||||    
T  27665425 ataagaga 27665432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 26959245 - 26959099
Alignment:
Q  4 ttagagaagacaacaatggcaattcttgagttttcaatgctctt-gaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaag 102  Q
    |||||||| || | ||||||||| || |||| |||||||||||| ||| |||||||||||||||||||| ||||| | |||||| ||||| |||||||||    
T  26959245 ttagagaaaacgataatggcaatcctcgagtcttcaatgctctttgagaagcgaaggtgtgatttcatccccttttttaagctctttgtcatcaatgaag 26959146  T
Q  103 gttcggactcctttttcacaaagagctttatagagattgccggtgaa 149  Q
    ||   || |||||| ||| |||||||||||||||| || ||||||||    
T  26959145 gtgtcgattcctttgtcagaaagagctttatagaggttaccggtgaa 26959099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 24715662 - 24715590
Alignment:
Q  3 tttagagaagacaacaatggcaattcttgagttttcaatgctcttgaggagcgaaggtgtgatttcatcacct 75  Q
    |||||||||||||| |||||||||| | |||| ||| ||||||||||||||||||| ||||||||||||||||    
T  24715662 tttagagaagacaataatggcaattttcgagtcttcgatgctcttgaggagcgaagatgtgatttcatcacct 24715590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 28491682 - 28491740
Alignment:
Q  58 ggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactccttt 116  Q
    ||||||||||| |||||||| |||||||||| |||||| ||||| || |||||||||||    
T  28491682 ggtgtgatttcttcacctttttgaagctcctcgtcgtccatgaaagtacggactccttt 28491740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 29804092 - 29804150
Alignment:
Q  58 ggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactccttt 116  Q
    ||||||||||| |||||||| |||||||||| |||||| ||||| || |||||||||||    
T  29804092 ggtgtgatttcttcacctttttgaagctcctcgtcgtccatgaaagtacggactccttt 29804150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 28781177 - 28781076
Alignment:
Q  45 cttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactcctttttcacaaagagctttatagagattgccg 144  Q
    ||||||||| || |||||||||||||| ||| | ||||| || ||||| ||||||||||||  || ||| || |||  |||||| || ||||||||||||    
T  28781177 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 28781078  T
Q  145 gt 146  Q
    ||    
T  28781077 gt 28781076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 29679704 - 29679795
Alignment:
Q  58 ggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactcctttttcacaaagagctttatagagattgccggtgaa 149  Q
    |||||||||||||| ||||||||||| | || ||| || ||||| |||| ||||||||| |||  |||||||||  |||| ||||| |||||    
T  29679704 ggtgtgatttcatcccctttctgaagattctcgtcatccatgaaagttctgactcctttgtcatcaagagctttccagaggttgccagtgaa 29679795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 26974804 - 26974758
Alignment:
Q  303 taagagttatttacgagtgtccatttatttaacattagtggcgaaactt 351  Q
    ||||||||||||| |||||||||||  |||||||||||| |||||||||    
T  26974804 taagagttatttatgagtgtccatt--tttaacattagtagcgaaactt 26974758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 27698643 - 27698744
Alignment:
Q  45 cttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactcctttttcacaaagagctttatagagattgccg 144  Q
    ||||||||| || |||||||||||||| ||| | ||||| || ||||| |||||||||||  ||| ||| || |||  |||||| || |||||||| |||    
T  27698643 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 27698742  T
Q  145 gt 146  Q
    ||    
T  27698743 gt 27698744  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 27718528 - 27718629
Alignment:
Q  45 cttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactcctttttcacaaagagctttatagagattgccg 144  Q
    ||||||||| || |||||||||||||| ||| | ||||| || ||||| |||||||||||  ||| ||| || |||  |||||| || |||||||| |||    
T  27718528 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 27718627  T
Q  145 gt 146  Q
    ||    
T  27718628 gt 27718629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 27724994 - 27725095
Alignment:
Q  45 cttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactcctttttcacaaagagctttatagagattgccg 144  Q
    ||||||||| || |||||||||||||| ||| | ||||| || ||||| |||||||||||  ||| ||| || |||  |||||| || |||||||| |||    
T  27724994 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 27725093  T
Q  145 gt 146  Q
    ||    
T  27725094 gt 27725095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 28098532 - 28098613
Alignment:
Q  59 gtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactcctttttcacaaagagctttatagagatt 140  Q
    ||||||||  ||||||||  ||||| || || | |||||||||||| |||||||||   |||||||||||||| ||||||||    
T  28098532 gtgtgattctatcaccttcatgaagatctttatggtcaatgaaggtgcggactcctccgtcacaaagagctttgtagagatt 28098613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 28786316 - 28786215
Alignment:
Q  45 cttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactcctttttcacaaagagctttatagagattgccg 144  Q
    ||||||||| || |||||||||||||| ||| | ||||| || ||||| ||||||||||||  || ||| || |||  |||||| || |||||||| |||    
T  28786316 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccg 28786217  T
Q  145 gt 146  Q
    ||    
T  28786216 gt 28786215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 28792437 - 28792336
Alignment:
Q  45 cttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactcctttttcacaaagagctttatagagattgccg 144  Q
    ||||||||| || |||||||||||||| ||| | ||||| || ||||| ||||||||||||  || ||| || |||  |||||| || |||||||| |||    
T  28792437 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccg 28792338  T
Q  145 gt 146  Q
    ||    
T  28792337 gt 28792336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 17993795 - 17993997
Alignment:
Q  7 gagaagacaacaatggcaattcttgagttttcaatgctcttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttc 106  Q
    |||||||| | ||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| || ||||||||||    
T  17993795 gagaagacgataatcgcaattcttgagtcttcaatgctcttgaggagcgacggtgtgatttcatcacctctctgaagctctttgtcatcgatgaaggttc 17993894  T
Q  107 ggactcctttttcacaaagagctttatagagattgccggtgaagcccgatcgagtatcagccccccgaaaactgacgaacgcatcgaagctgaaatcata 206  Q
    | | ||| || ||| ||||||||||||||||||| |||||||| ||  |||||||||| |  ||||  ||||| | |||| |||||||||||||| ||||    
T  17993895 gaattcccttgtcagaaagagctttatagagattaccggtgaaaccatatcgagtatcggtacccctgaaactaatgaacacatcgaagctgaaaccata 17993994  T
Q  207 aga 209  Q
    |||    
T  17993995 aga 17993997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 66 - 167
Alignment:
Q  45 cttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactcctttttcacaaagagctttatagagattgccg 144  Q
    ||||||||| || |||||||||||||| ||| | ||||| || ||||| ||||||||||||  || ||| || |||  |||||| || ||||||||||||    
T  66 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 165  T
Q  145 gt 146  Q
    ||    
T  166 gt 167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 7563 - 7462
Alignment:
Q  45 cttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactcctttttcacaaagagctttatagagattgccg 144  Q
    ||||||||| || |||||||||||||| ||| | ||||| || ||||| ||||||||||||  || ||| || |||  |||||| || ||||||||||||    
T  7563 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 7464  T
Q  145 gt 146  Q
    ||    
T  7463 gt 7462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 13781 - 13882
Alignment:
Q  45 cttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactcctttttcacaaagagctttatagagattgccg 144  Q
    ||||||||| || |||||||||||||| ||| | ||||| || ||||| ||||||||||||  || ||| || |||  |||||| || ||||||||||||    
T  13781 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 13880  T
Q  145 gt 146  Q
    ||    
T  13881 gt 13882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 3571 - 3672
Alignment:
Q  45 cttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactcctttttcacaaagagctttatagagattgccg 144  Q
    ||||||||| || |||||||||||||| ||| | ||||| || ||||| |||||||||||  ||| ||| || |||  |||||| || |||||||| |||    
T  3571 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 3670  T
Q  145 gt 146  Q
    ||    
T  3671 gt 3672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 14504 - 14605
Alignment:
Q  45 cttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggttcggactcctttttcacaaagagctttatagagattgccg 144  Q
    ||||||||| || |||||||||||||| ||| | ||||| || ||||| |||||||||||  ||| ||| || |||  |||||| || |||||||| |||    
T  14504 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 14603  T
Q  145 gt 146  Q
    ||    
T  14604 gt 14605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 241789 - 241916
Alignment:
Q  4 ttagagaagacaacaatggcaattcttgagttttcaat-gctcttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaag 102  Q
    ||||||| |||||||||||| ||  | |||| |||||| ||| ||||| || || ||||||||||| ||||||||   |||||||||||| || |||||     
T  241789 ttagagaggacaacaatggccatcatggagtcttcaattgct-ttgagaagtgatggtgtgatttcttcaccttttctaagctccttgtcatccatgaaa 241887  T
Q  103 gttcggactcctttttcacaaagagcttt 131  Q
    ||||| | |||||| |||  |||||||||    
T  241888 gttcgaattcctttgtcatcaagagcttt 241916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 5924474 - 5924565
Alignment:
Q  13 acaacaatggcaattcttgagttttcaat-gctcttgaggagcgaaggtgtgatttcatcacctttctgaagctccttgtcgtcaatgaaggt 104  Q
    |||||||||||||||||||| |||||||| ||| ||||| || || ||||||||||  |||||||| ||||| |  | |||||| ||||||||    
T  5924474 acaacaatggcaattcttgaattttcaatagct-ttgagaagtgagggtgtgatttggtcacctttttgaagatgatcgtcgtcgatgaaggt 5924565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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