View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14804_low_2 (Length: 293)
Name: NF14804_low_2
Description: NF14804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14804_low_2 |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: scaffold0642 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 64 - 227
Target Start/End: Original strand, 8136 - 8299
Alignment:
| Q |
64 |
aaatcttgggtcctatttcttccaatctcacagttcctaaatgatttctcaccatcgtgcaattgaacataataaccataatccctccctttttggcgga |
163 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8136 |
aaatcttgggtcctatttctttcaatctcacaattcctaaatcatttctcaccatcgtgcaattgaacataataaccataatccctccctttttggcaga |
8235 |
T |
|
| Q |
164 |
cataattaattttcttgnnnnnnnnggtctgcaatgaattgaatcaggcagcacatgaaaagtt |
227 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
8236 |
cataattaattttcttgaaaaaaaaggtctccaagaaattgaatcaggcaacacatgaaaagtt |
8299 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 64 - 227
Target Start/End: Original strand, 18049 - 18212
Alignment:
| Q |
64 |
aaatcttgggtcctatttcttccaatctcacagttcctaaatgatttctcaccatcgtgcaattgaacataataaccataatccctccctttttggcgga |
163 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18049 |
aaatcttgggtcctatttctttcaatctcacaattcctaaatcatttctcaccatcgtgcaattgaacataataaccataatccctccctttttggcaga |
18148 |
T |
|
| Q |
164 |
cataattaattttcttgnnnnnnnnggtctgcaatgaattgaatcaggcagcacatgaaaagtt |
227 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||| |
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|
| T |
18149 |
cataattaattttcttgaaaaaaaaggtctccaagaaattgaatcaggcaacacatgaaaagtt |
18212 |
T |
|
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Target: scaffold0105 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 64 - 227
Target Start/End: Complemental strand, 20933 - 20770
Alignment:
| Q |
64 |
aaatcttgggtcctatttcttccaatctcacagttcctaaatgatttctcaccatcgtgcaattgaacataataaccataatccctccctttttggcgga |
163 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
20933 |
aaatcttgggtcctatttctttcaatctcacaattcctaaatcatttctcaccatcgtgcaattgaacataataaccataatccctccctttttggcaga |
20834 |
T |
|
| Q |
164 |
cataattaattttcttgnnnnnnnnggtctgcaatgaattgaatcaggcagcacatgaaaagtt |
227 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||| |
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|
| T |
20833 |
cataattaattttcttgaaaaaaaaggtctccaagaaattgaatcaggcaacacatgaaaagtt |
20770 |
T |
|
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Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 64 - 227
Target Start/End: Complemental strand, 8194277 - 8194114
Alignment:
| Q |
64 |
aaatcttgggtcctatttcttccaatctcacagttcctaaatgatttctcaccatcgtgcaattgaacataataaccataatccctccctttttggcgga |
163 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8194277 |
aaatcttgggtcctatttctttcaatctcacaattcctaaatcatttctcaccatcgtgcaattgaacataataaccataatccctccctttttggcaga |
8194178 |
T |
|
| Q |
164 |
cataattaattttcttgnnnnnnnnggtctgcaatgaattgaatcaggcagcacatgaaaagtt |
227 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
8194177 |
cataattaattttcttgaaaaaaaaggtctccaagaaattgaatcaggcaacacatgaaaagtt |
8194114 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 172
Target Start/End: Original strand, 23842493 - 23842633
Alignment:
| Q |
32 |
atgtgattgcttcaatgctatgtattttatacaaatcttgggtcctatttcttccaatctcacagttcctaaatgatttctcaccatcgtgcaattgaac |
131 |
Q |
| |
|
||||||||||||||||| |||||||| | ||||||||||||||||||||||| |||||||| | | ||||||| |||||||||||| ||||||||||| |
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|
| T |
23842493 |
atgtgattgcttcaatgttatgtattcaacacaaatcttgggtcctatttctttcaatctcagaatccctaaatcttttctcaccatcatgcaattgaac |
23842592 |
T |
|
| Q |
132 |
ataataaccataatccctccctttttggcggacataattaa |
172 |
Q |
| |
|
| |||| ||||| ||| ||| |||||||| || ||||||| |
|
|
| T |
23842593 |
ctgataatcataaccccaccccttttggcgtacctaattaa |
23842633 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 8564870 - 8564732
Alignment:
| Q |
38 |
ttgcttcaatgctatgtattttatacaaatcttgggtcctatttcttccaatctcacagttcctaaatgatttctcaccatcgtgcaattgaacataata |
137 |
Q |
| |
|
||||||||||| || ||||| || |||||||||||||||||||||| |||| ||||| | ||||||| ||||||||||||| ||||||||||| ||||| |
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|
| T |
8564870 |
ttgcttcaatgttacgtattcaatgcaaatcttgggtcctatttctttcaatgtcacaatccctaaatcatttctcaccatcatgcaattgaacctaata |
8564771 |
T |
|
| Q |
138 |
accataatccctccctttttggcggacataattaatttt |
176 |
Q |
| |
|
||||||| || ||||||||| ||| | |||| |||||| |
|
|
| T |
8564770 |
accataaccctgccctttttgacgggcctaataaatttt |
8564732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 164
Target Start/End: Original strand, 2959984 - 2960116
Alignment:
| Q |
32 |
atgtgattgcttcaatgctatgtattttatacaaatcttgggtcctatttcttccaatctcacagttcctaaatgatttctcaccatcgtgcaattgaac |
131 |
Q |
| |
|
|||| |||||||||||| |||||||| | | ||||||||| ||||||||||| |||||||||| | ||||||| |||||| || || | |||||||| |
|
|
| T |
2959984 |
atgttattgcttcaatgttatgtattcaacataaatcttggatcctatttctttcaatctcacactacctaaatcatttctgactattatacaattgaat |
2960083 |
T |
|
| Q |
132 |
ataataaccataatccctccctttttggcggac |
164 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||| |
|
|
| T |
2960084 |
ctaataatcataaacccgtcctttttggcggac |
2960116 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 176
Target Start/End: Original strand, 10927942 - 10928085
Alignment:
| Q |
32 |
atgtgattgcttcaatgctatgtattttatacaaatcttgggtcctatttcttccaatctcacagttcctaaatgatttctcaccatcgtgcaattgaac |
131 |
Q |
| |
|
||||| ||||||||||| |||||||| | ||||||||||||||||||||||| |||||| ||| | ||||||| |||||||||||| |||||||||| |
|
|
| T |
10927942 |
atgtggttgcttcaatgttatgtattcaacacaaatcttgggtcctatttctttcaatcttacaatccctaaatcatttctcaccattacgcaattgaac |
10928041 |
T |
|
| Q |
132 |
ataataaccataatccctccctttttggcggacataattaatttt |
176 |
Q |
| |
|
|||||||||||| ||| | ||||| |||||| ||||||||||| |
|
|
| T |
10928042 |
ctaataaccataa-cccatcattttttgcggacctaattaatttt |
10928085 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 176
Target Start/End: Complemental strand, 40140539 - 40140396
Alignment:
| Q |
32 |
atgtgattgcttcaatgctatgtattttatacaaatcttgggtcctatttcttccaatctcacagttcctaaatgatttctcaccatcgtgcaattgaac |
131 |
Q |
| |
|
|||||||| |||||||| |||||||| | |||||| ||| ||| |||||||| ||||||||| | ||||||| ||||||| ||||| | ||||||||| |
|
|
| T |
40140539 |
atgtgattccttcaatgttatgtattcaacacaaattttgtgtcttatttcttt-aatctcacaatccctaaatcatttctcgccatcatacaattgaac |
40140441 |
T |
|
| Q |
132 |
ataataaccataatccctccctttttggcggacataattaatttt |
176 |
Q |
| |
|
||| |||||||| || |||||||||| || | ||||||||||| |
|
|
| T |
40140440 |
ctaacaaccataactccgccctttttggtgggcctaattaatttt |
40140396 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 2129266 - 2129378
Alignment:
| Q |
64 |
aaatcttgggtcctatttcttccaatctcacagttcctaaatgatttctcaccatcgtgcaattgaacataataaccataatccctccctttttggcgga |
163 |
Q |
| |
|
|||||||||||| | |||||| |||||| ||| | ||||||| ||||||||||||| ||||||||||| |||||||||||| || |||||||||||||| |
|
|
| T |
2129266 |
aaatcttgggtcatgtttctttcaatcttacaatccctaaattatttctcaccatcatgcaattgaacctaataaccataacccaaccctttttggcgga |
2129365 |
T |
|
| Q |
164 |
cataattaatttt |
176 |
Q |
| |
|
| |||||||||| |
|
|
| T |
2129366 |
cccaattaatttt |
2129378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 11927342 - 11927422
Alignment:
| Q |
64 |
aaatcttgggtcctatttcttccaatctcacagttcctaaatgatttctcaccatcgtgcaattgaacataataaccataa |
144 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| | ||||||| ||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
11927342 |
aaatcttgggtcctatttctttcaatgtcacaatccctaaatcatttctcaccatcatgcaattgaacctaataaccataa |
11927422 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 7778574 - 7778680
Alignment:
| Q |
38 |
ttgcttcaatgctatgtattttatacaaatcttgggtcctatttcttccaatctcacagttcctaaatgatttctcaccatcgtgcaattgaacataata |
137 |
Q |
| |
|
||||||||||| || ||||| | |||||||||||||||||||||| |||| ||||| | ||||||| |||||||||| || ||||||||||| ||||| |
|
|
| T |
7778574 |
ttgcttcaatgttacgtattcaacgcaaatcttgggtcctatttctttcaatgtcacaatccctaaatcatttctcaccgtcatgcaattgaacctaata |
7778673 |
T |
|
| Q |
138 |
accataa |
144 |
Q |
| |
|
||||||| |
|
|
| T |
7778674 |
accataa |
7778680 |
T |
|
Back To:
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 10024642 - 10024581
Alignment:
| Q |
32 |
atgtgattgcttcaatgctatgtattttatacaaatcttgggtcctatttcttccaatctca |
93 |
Q |
| |
|
||||| ||||||||||| ||| |||| | ||||||||||||||||||||||| |||||||| |
|
|
| T |
10024642 |
atgtgtttgcttcaatgttatctattcaacacaaatcttgggtcctatttctttcaatctca |
10024581 |
T |
|
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