View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14804_low_3 (Length: 275)
Name: NF14804_low_3
Description: NF14804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14804_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 6233710 - 6233795
Alignment:
| Q |
20 |
ctagcaacagacattatgttttataatcctttgaatccaacttctatatagtgagcaactcactgtaaacatactatatcaatcgt |
105 |
Q |
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| T |
6233710 |
ctagcaacagacattatgttttataatcctttgaatccaacttctatatagttagcaactcactataaacatactatatcaatcgt |
6233795 |
T |
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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 6233864 - 6233960
Alignment:
| Q |
174 |
cattgattttttcattttagaggatccttatccaatatttatgatatttaaataggaaataggaagaaatttag----gtacaatttcttagatatt |
266 |
Q |
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| T |
6233864 |
cattgattttctcattttagaggatccttatccaatatttatgatatttaaataggaaataggaagaaacttaattatgtacaatttcttagatatt |
6233960 |
T |
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