View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14805_high_10 (Length: 330)

Name: NF14805_high_10

Description: NF14805

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14805_high_10

[»] scaffold0019 (2 HSPs)

Target: scaffold0019 (Bit Score: 247; Significance: 1e-137; HSPs: 2)

Name: scaffold0019

Description:

Target: scaffold0019; HSP #1

Raw Score: 247; E-Value: 1e-137

Query Start/End: Original strand, 1 - 251

Target Start/End: Complemental strand, 54603 - 54353

Alignment:

Q	1	tggagattttactatgaagttaggacctttctaccattttggatattgtactgctcattagttgagtgtctgcatctgcatcgttcagattcaggtgaac	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	54603	tggagattttactatgaagttaggacctttctaccattttggatattgtactgctcattagttgagtgtctgcatctgcatcgttcagattcaggtgaac	54504	T

Q	101	gaatctgtttttctttgctatttcggcaaacctgatgatatttttagtaagttctttaaaacatagatatagtgttttgttccgtgcatatagcagacga	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	54503	gaatctgtttttctttgctatttcggcaaacctgatgatatttttagtaagttctttaaaacatagatatagtgttttgttccgtgcatatagcagacga	54404	T

Q	201	aagtagaggaaagactatataatggagtttctcaccaagtttccgaagctt	251	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	54403	aagtagaggaaagactatataatggagtttctcaccaaatttccgaagctt	54353	T

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Target: scaffold0019; HSP #2

Raw Score: 44; E-Value: 5e-16

Query Start/End: Original strand, 252 - 316

Target Start/End: Complemental strand, 54331 - 54267

Alignment:

Q	252	atgttgcgtttttatgtttaggaatgatgattccattaaatannnnnnnctcttatcatattact	316	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	54331	atgttgcgtttttatgtttaggaatgatgattccattaaatatttttttctcttatcatattact	54267	T

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