View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14805_high_13 (Length: 276)
Name: NF14805_high_13
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 1746693 - 1746878
Alignment:
| Q |
1 |
atagggccaacaccaacactaacacatcataaaaccatctagtaaaaaccaagaactacactattaccccccaattttagtcctcaatcagcataacagc |
100 |
Q |
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| T |
1746693 |
atagggccaacaccaacactaacacatcataaaaccatctagtaaaaaccaagaactacactattaccccccaattttagtcctcaatcagcatgacagc |
1746792 |
T |
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| Q |
101 |
atcaccactacacccatgctagcaacagtcactgcagaagtagtcaagataacagattaaacatatacttttctaataccattgta |
186 |
Q |
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| T |
1746793 |
atcaccactacacccatgctagcaacagtcactgcagaagtagtcaagataacagattaaacatatacttttctaataccattgta |
1746878 |
T |
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Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 1747223 - 1747319
Alignment:
| Q |
180 |
cattgtactcgccttcgttttatggtcgaaccttcttttgcctaagcattcacaataaaattcgcttctcgattaatatgcacaaatgaaaccttct |
276 |
Q |
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| T |
1747223 |
cattgtactcgccttcgttttatggtcgaaccttcttttgcctaagcattcacaataaaattcgcttctcgattaatatgcacaaacgaaaccttct |
1747319 |
T |
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