View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14805_high_14 (Length: 276)
Name: NF14805_high_14
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_high_14 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 51991690 - 51991937
Alignment:
| Q |
9 |
atactcctctataaaaaagagtaatgcacagttgtaaaatgaagtcttcattctataatatcattcaataatatataattttctttcatacacttcttta |
108 |
Q |
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| T |
51991690 |
atactcctctataaaaaagagtaatgcacagttgtaaaatgaagtcttcattctataatatcattcaataata----attttctttcagacacttcttta |
51991785 |
T |
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| Q |
109 |
tctcaatttcggtaaaagttcacagtggtatcgaaaccaacattggatgggtcaactgaatagttagtatctgttgacaatgaattaagcgtgcgatttt |
208 |
Q |
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| T |
51991786 |
tctcaatttcggtaaaagttcacagtggtatcgaaaccaacattggatgggtcaactgaatagttagtatctattgacaatgaattaagcgtgcgatttt |
51991885 |
T |
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| Q |
209 |
agtgagcttgaatatcctccttattgtacaaactttggtgccaagaaagtag |
260 |
Q |
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| T |
51991886 |
agtgagcttgaatatcctccttattgtacaaactttggtgccaagaaagtag |
51991937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 59666 - 59607
Alignment:
| Q |
147 |
aacattggatgggtcaactgaatagttagtatctgttgacaatgaattaagcgtgcgatt |
206 |
Q |
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| T |
59666 |
aacattggatgggtcaactgaatagttagtatgtattggcaatgaattaagcgtgtgatt |
59607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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