View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14805_high_15 (Length: 264)
Name: NF14805_high_15
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_high_15 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 36808090 - 36808349
Alignment:
| Q |
12 |
gagagagaagaaagagagttcaatgtgattttaacttgttttatatccaaaaccatgttgtcttgaagaatagtcgtaaaatcaccgcctttgagttact |
111 |
Q |
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| T |
36808090 |
gagagagaagaaagcgagttcaatgtgattttaacttgttttatatccaaaaccatgttgtcttgaagaatagtcgtaaaatcaccgcctttgagttaca |
36808189 |
T |
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| Q |
112 |
actcaaaaattattgttaaggacaacaaattacattacagtacagaaaatcaaagattatatttatgcaggatggtgtcatccaagatcagcctaccaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36808190 |
actcaaaaattattgttaaggacaacaaattacattacagtacagaaaattaaagattatatttatgcaggatggtgtcatccaagatcagcctagcaaa |
36808289 |
T |
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| Q |
212 |
ataggaattaggggagaaacg-------tcgggagaaacagagaatggaacagaacccgt |
264 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
36808290 |
ataggaattaggggagaaacggctgaatttgggagaaacagagaatggaacagaacccgt |
36808349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 36526307 - 36526268
Alignment:
| Q |
12 |
gagagagaagaaagagagttcaatgtgattttaacttgtt |
51 |
Q |
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| T |
36526307 |
gagagagaagaaagagagttcaatgtgattttaacttgtt |
36526268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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