View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14805_high_18 (Length: 254)
Name: NF14805_high_18
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_high_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 36057518 - 36057278
Alignment:
| Q |
14 |
caaaggcaagtgcacaatcaattcttcatgaaactctaacttcaatgtcttgagttttgatgcgagattagacatttctataagtactcccttatgtttc |
113 |
Q |
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| T |
36057518 |
caaagccaagtgcacaatcaattcttcatgaaactctaacttcaatgtcttgagttttgatgcgagattagacatttctataagtactcccttatgtttc |
36057419 |
T |
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| Q |
114 |
atttacctttataaattcattgaaatgagcttaaataaaacactacttatctcaaccttatcattcttgaaaaagaattgctatgtggtttaaaagaact |
213 |
Q |
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| T |
36057418 |
atttacctttataaattcattgaaatgagcttaaataaaacactacttatctcaaccttatcattcttgaaaaagaattgctatgtggtttaaaagaact |
36057319 |
T |
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| Q |
214 |
ttttgaaactttcgctctcaggaatcgagcccctaatcact |
254 |
Q |
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| T |
36057318 |
ttttgaaactttcgctctcaggaatcgaacccctaatcact |
36057278 |
T |
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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 28723808 - 28723708
Alignment:
| Q |
24 |
tgcacaatcaattcttcatgaaactctaacttcaatgtcttgagttttgatgcgagattagacattt-ctataagtactcccttatgtttcatttacctt |
122 |
Q |
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|||||||| || |||||| ||| |||||||||| || ||||||||||||||||||||||||||||| | ||| ||||||||||||||| | |||||||| |
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| T |
28723808 |
tgcacaattaaatcttcaggaagttctaacttcagtgccttgagttttgatgcgagattagacatttccaatatgtactcccttatgttccctttacctt |
28723709 |
T |
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| Q |
123 |
t |
123 |
Q |
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| T |
28723708 |
t |
28723708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 23070341 - 23070502
Alignment:
| Q |
20 |
caagtgcacaatcaattcttcatgaaactctaacttcaatgtcttgagttttgatgcgagattagacatttct-ataagtactcccttatgtttcattta |
118 |
Q |
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|||||||||||| || |||||| ||| ||||| ||| || ||||||||| | || ||||||||||||||| | | ||| ||||||||||| | |||| |
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| T |
23070341 |
caagtgcacaattaaatcttcaagaagttctaaattccgtgccttgagtttgaaggcaagattagacatttctaagatgtattcccttatgttcccttta |
23070440 |
T |
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| Q |
119 |
cctttataaattcattgaaatgagcttaaataaaacactacttatctcaaccttatcattctt |
181 |
Q |
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||||| | | |||||||||| || || |||||||| |||| | ||||||||||||||||| |
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| T |
23070441 |
cctttgt-agctcattgaaataagtttggataaaacaatactagtttcaaccttatcattctt |
23070502 |
T |
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