View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14805_high_2 (Length: 579)
Name: NF14805_high_2
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 329
Target Start/End: Original strand, 41546210 - 41546532
Alignment:
| Q |
9 |
tggagaagcaaaggcataaacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtca |
108 |
Q |
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| T |
41546210 |
tggagaagaaaaggcataaacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtca |
41546309 |
T |
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| Q |
109 |
aactttgtgactatgttgctatctttgatgctgattttcaacctgagtctaactttctttaccgcaccattccattccttgatcaaaatccacaagttgg |
208 |
Q |
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| T |
41546310 |
aactttgtgactatgttgccatctttgatgctgattttcaacctgagtctaactttctttaccgcaccattccattccttgatcaaaatccacaagttgg |
41546409 |
T |
|
| Q |
209 |
actagttcaagctcgatggcaattcggtaattttttagaccttcatgaaactcttaattat---taattgagattaatgttttatgcattggctgtgtaa |
305 |
Q |
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| T |
41546410 |
actagttcaagctcgatggcaattcggtaattttttagaccttcatgaaactcctaattattagtaattgagattaat-tgttatgcattgactgtgtaa |
41546508 |
T |
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| Q |
306 |
catttttacacataaactcaatca |
329 |
Q |
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| T |
41546509 |
catttttacacataaactcaatca |
41546532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 368 - 570
Target Start/End: Original strand, 41546615 - 41546825
Alignment:
| Q |
368 |
ttgcagttaatgctgatgaatgcttaatgacaagaatgcaagagatgtcattggactatcatttccttgtggaacaggaagttggttccataacacatgc |
467 |
Q |
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| T |
41546615 |
ttgcagttaatgctgatgaatgcttaatgacaagaatgcaagagatgtcattggactatcatttccttgtggaacaggaagttggttccataactcatgc |
41546714 |
T |
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| Q |
468 |
tttctttggtttcaatggtaaatatcattaaattccctattacagctttgaatatctagta---aattgtattag----aacaatcagccatgtgatatt |
560 |
Q |
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| T |
41546715 |
tttctttggtttcaatggtaaatatcattaaattcccttatacagcttggaataactactaattaactgtattagaattaacaatcagccatgtgatatt |
41546814 |
T |
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| Q |
561 |
ag-tgatgatg |
570 |
Q |
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| T |
41546815 |
agatgatgatg |
41546825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 26832796 - 26832654
Alignment:
| Q |
9 |
tggagaagcaaaggcataaacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtca |
108 |
Q |
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|||||||||||||| | || ||||||||||| | ||||| |||||||||||||||||||| ||||| | || || |||||||| ||||||||||| | |
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| T |
26832796 |
tggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtga |
26832697 |
T |
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| Q |
109 |
aactttgtgactatgttgctatctttgatgctgattttcaacc |
151 |
Q |
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| T |
26832696 |
aacaatgtgattatgttgctatctttgatgctgattttcaacc |
26832654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 26786060 - 26785933
Alignment:
| Q |
27 |
aacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttg |
126 |
Q |
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| T |
26786060 |
aacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttg |
26785961 |
T |
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| Q |
127 |
ctatctttgatgctgattttcaacctga |
154 |
Q |
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| T |
26785960 |
ccatctttgatgctgattttcaacctga |
26785933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 26791800 - 26791673
Alignment:
| Q |
27 |
aacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttg |
126 |
Q |
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|||||||||||||| | ||||| || |||||||| ||||||||||||||||| || || |||||||| ||||| ||||| || ||||| ||||||| |
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| T |
26791800 |
aacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttg |
26791701 |
T |
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| Q |
127 |
ctatctttgatgctgattttcaacctga |
154 |
Q |
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| T |
26791700 |
ccatctttgatgctgattttcaacctga |
26791673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 26822701 - 26822574
Alignment:
| Q |
27 |
aacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttg |
126 |
Q |
| |
|
|||||||||||||| | ||||| || |||||||| ||||||||||||||||| || || |||||||| ||||| ||||| || ||||| ||||||| |
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| T |
26822701 |
aacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttg |
26822602 |
T |
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| Q |
127 |
ctatctttgatgctgattttcaacctga |
154 |
Q |
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| T |
26822601 |
ccatctttgatgctgattttcaacctga |
26822574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 417
Target Start/End: Complemental strand, 26831746 - 26831705
Alignment:
| Q |
376 |
aatgctgatgaatgcttaatgacaagaatgcaagagatgtca |
417 |
Q |
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| T |
26831746 |
aatgcggatgaatgtttaatgacaaggatgcaagagatgtca |
26831705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 41917455 - 41917576
Alignment:
| Q |
30 |
ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcta |
129 |
Q |
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| T |
41917455 |
ataaagtatgaagttagggacaatagaaatggatacaaagcaggggctttaaaagaaggaatgaagcatagctatgtgaagcaatgtgatcatgttgcaa |
41917554 |
T |
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| Q |
130 |
tctttgatgctgattttcaacc |
151 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
41917555 |
tatttgatgctgattttcaacc |
41917576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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