View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14805_high_21 (Length: 213)

Name: NF14805_high_21
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14805_high_21
NF14805_high_21
[»] chr4 (9 HSPs)
chr4 (12-198)||(35097796-35097982)
chr4 (12-198)||(35098085-35098271)
chr4 (22-198)||(35072700-35072876)
chr4 (22-190)||(35106984-35107152)
chr4 (21-184)||(36940509-36940672)
chr4 (12-198)||(36296473-36296659)
chr4 (21-175)||(36961352-36961507)
chr4 (101-190)||(36935885-36935975)
chr4 (93-139)||(36953720-36953766)
[»] chr6 (2 HSPs)
chr6 (12-198)||(24014199-24014385)
chr6 (10-188)||(24040766-24040944)
[»] chr5 (1 HSPs)
chr5 (71-175)||(34919131-34919235)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 35097796 - 35097982
Alignment:
Q  12 gagatgaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcga 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35097796 gagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcga 35097895  T
Q  112 aaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35097896 aaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagt 35097982  T

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Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 35098085 - 35098271
Alignment:
Q  12 gagatgaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcga 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098085 gagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcga 35098184  T
Q  112 aaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098185 aaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagt 35098271  T

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Target: chr4; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 35072876 - 35072700
Alignment:
Q  22 ttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggacca 121  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  || ||||||||||||||||| ||    
T  35072876 ttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagataaccagagaatgcgaaaatggatca 35072777  T
Q  122 agtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||    
T  35072776 agtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagt 35072700  T

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Target: chr4; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 35106984 - 35107152
Alignment:
Q  22 ttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggacca 121  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||    
T  35106984 ttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatca 35107083  T
Q  122 agtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctga 190  Q
    |||||||||||| |||||||||||||||||| |||| ||||| || || ||||||||||||||||||||    
T  35107084 agtgaaagctgctatggagaatggtgttctcgctgtcactgtccctaaggaagagatcaagaagcctga 35107152  T

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Target: chr4; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 36940672 - 36940509
Alignment:
Q  21 gttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggacc 120  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||| |    
T  36940672 gttgagaaagaagataagaacgatcaatggcatcccgtggagcgtagcagtgggaagttcatgaggagattaagattgcctgagaatgctaaaatggatc 36940573  T
Q  121 aagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaa 184  Q
    || ||||||||||||||||||||||  |||||||||| ||||| || ||| |||||||||||||    
T  36940572 aaatgaaagctgcaatggagaatggcattctcactgtcactgtgcctaaaaaagagatcaagaa 36940509  T

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Target: chr4; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 36296659 - 36296473
Alignment:
Q  12 gagatgaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcga 111  Q
    |||| ||| |||||||||||||| |||||| | ||||||||||| ||||||||||||||||| || || |||||||||||||||||||| || ||||| |    
T  36296659 gagaggaacgttgagaaagaagacaagaacaaccaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgcca 36296560  T
Q  112 aaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagt 198  Q
    | ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||  | ||||| |||||||||||||    
T  36296559 agatggatcaggtgaaagctgcaatggagaatggtgttctcactgtaactgttccaaaagaagaagttaagaaacctgatgttaagt 36296473  T

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Target: chr4; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 36961352 - 36961507
Alignment:
Q  21 gttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggacc 120  Q
    ||||||||||||||||||||| || |||||||| | ||||||| ||||||||||||||||||||||| ||| |||||| | |||||||| || ||||| |    
T  36961352 gttgagaaagaagataagaacaatgaatggcattgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatc 36961451  T
Q  121 aagtgaaagc-tgcaatggagaatggtgttctcactgttactgttccaaaagaaga 175  Q
    | ||||| ||   ||  ||||||||||||||||||||| ||| |||| || |||||    
T  36961452 aggtgaatgcaaacatgggagaatggtgttctcactgtaactattcctaaggaaga 36961507  T

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Target: chr4; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 36935975 - 36935885
Alignment:
Q  101 tgagaatgcgaaaatggaccaagtgaaagctgcaat-ggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctga 190  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| || ||| |||||||| | |||||||||||    
T  36935975 tgagaatgctaaaatggatcaagtgaaagctgcaattggagaatggtgttctcactgttaccgtgccacaagaagaggttaagaagcctga 36935885  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 36953766 - 36953720
Alignment:
Q  93 agattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatgga 139  Q
    ||||||||||| ||||| |||| ||| ||||||||||||||||||||    
T  36953766 agattgcctgacaatgctaaaacggatcaagtgaaagctgcaatgga 36953720  T

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Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 24014385 - 24014199
Alignment:
Q  12 gagatgaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcga 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||| ||||| ||||| || |||||||    
T  24014385 gagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggttgcccgaaaatgcga 24014286  T
Q  112 aaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagt 198  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||    
T  24014285 aaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagt 24014199  T

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Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 10 - 188
Target Start/End: Complemental strand, 24040944 - 24040766
Alignment:
Q  10 gtgagatgaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgc 109  Q
    |||||| ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||    
T  24040944 gtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgc 24040845  T
Q  110 gaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcct 188  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| || || |||||  | |||||||||    
T  24040844 gaaaatggatcaagtgaaagctgcaatggagaatggtattctcactgtcactgtccctaaggaagaagttaagaagcct 24040766  T

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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 34919131 - 34919235
Alignment:
Q  71 tgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaa 170  Q
    |||||| || ||||||||||| || |||||||||||||  |||||||| || || |||||||  ||||||||||| ||||| |||||||||||||| ||     
T  34919131 tgggaagtttatgaggaggtttaggttgcctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaag 34919230  T
Q  171 gaaga 175  Q
    |||||    
T  34919231 gaaga 34919235  T

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