View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14805_high_24 (Length: 204)
Name: NF14805_high_24
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_high_24 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 68; Significance: 1e-30; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 2272828 - 2272895
Alignment:
| Q |
137 |
gatttgattaccactgattaattgaatccattatttggcagcacacacagagcttcatttggtgaata |
204 |
Q |
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| T |
2272828 |
gatttgattaccactgattaattgaatccattatttggcagcacacacagagcttcatttggtgaata |
2272895 |
T |
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Target: chr7; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 2274384 - 2274451
Alignment:
| Q |
137 |
gatttgattaccactgattaattgaatccattatttggcagcacacacagagcttcatttggtgaata |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274384 |
gatttgattaccactgattaattgaatccattatttggcagcacacacagagcttcatttggtgaata |
2274451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2274249 - 2274304
Alignment:
| Q |
1 |
tcgatgtatctgatcatgtacctaaatagtgagattagaaacatacattaattgag |
56 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274249 |
tcgatgtctctgatcatgtacctaaatagtgagattagaaacatacattaattgag |
2274304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2272691 - 2272748
Alignment:
| Q |
1 |
tcgatgtatctgatcatgtacctaaatagtgagattagaaac--atacattaattgag |
56 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2272691 |
tcgatgtctctcatcatgtacctaaatagtgagattagaaacatatacattaattgag |
2272748 |
T |
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