View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14805_high_5 (Length: 531)
Name: NF14805_high_5
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_high_5 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
| [»] scaffold0188 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 38952098 - 38952616
Alignment:
| Q |
1 |
acgaaaaatgaaggagatgccatttcagagaatcccaatgcaggaagagctacatgagagacaatnnnnnnnnnnnnnnnnntttaagatgaatgtggga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38952098 |
acgaaaaatgaaggagatgccatttcagagaatcccaatgcaggaagagctacatgagagacaatgagagagagagagagagtttaagatgaatgtggga |
38952197 |
T |
|
| Q |
101 |
aatggcagagaagacattggaaaatgagagttactattaaccttgaaaatgaaaaaggggtgactactaatgctgattacgataagcactcagaagaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38952198 |
aatggcagagaagacattggaaaatgagagttactattaaccttgaaaatgaaaaaggggtgactactaatgctgattacgataagcactcagaagaatt |
38952297 |
T |
|
| Q |
201 |
gaatgcttgcacggagggaaaatgcgtcgcactggtcttttagaatagaaaatatagaggtggaagacaatgcattagaagaatcgtctttnnnnnnnnt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38952298 |
gaatgcttgcacggagggaaaatgcgtcgcactggtcttttagaatagaaaatatagaggtggaagacaatgcattagaagaatcgtctttaaaaaaaat |
38952397 |
T |
|
| Q |
301 |
gatttattgagagtatcaagactcattcattatgctcatttacaacacaatctcaaacatctttgtgttccaccatcatcaattggtgtgacttatattc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38952398 |
gatttattgagagtatcaagactcattcattatgctcatttacaacacaatctcaaacatctttgtgttccaccatcatcaattggtgtgacttatattc |
38952497 |
T |
|
| Q |
401 |
ccttttctcttctctttccacttgacttggttgatgaagtattcacagctttcaaacaatcctatacaaaacgataaaattaaatttaaaacaaattttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38952498 |
ccttttctcttctctttccacttgacttggttgatgaagtattcacagctttcaaacaatcctatacaaaacgataaaattaaatttaaaacaaattttg |
38952597 |
T |
|
| Q |
501 |
aatttcctttgtgtctgtg |
519 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
38952598 |
aatttcctttgtgtgtgtg |
38952616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 25890264 - 25890349
Alignment:
| Q |
86 |
aagatgaatgtgggaaatggcagagaagacattggaaaatgagag---ttac-tattaaccttgaaaatgaaaaaggggtgactac |
167 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||| | || ||||||||||| |||||||||||| |||||||| |
|
|
| T |
25890264 |
aagatgaatgtgggaaatggcatagaagacattgaaaaatgagagagttaacatattaaccttggaaatgaaaaaggtgtgactac |
25890349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25890157 - 25890194
Alignment:
| Q |
1 |
acgaaaaatgaaggagatgccatttcagagaatcccaa |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25890157 |
acgaaaaatgaaggagatgccatttcagagactcccaa |
25890194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 223 - 436
Target Start/End: Original strand, 202966 - 203178
Alignment:
| Q |
223 |
tgcgtcgcactggtcttttagaatagaaaatatagaggtggaagacaatgcattagaagaatcgtctttnnnnnnnntgatttattgagagtatcaagac |
322 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
202966 |
tgcgtcgcacgggtcttttagaatagaaaatatagaggtggaagaaaatacattagaagaatcgtctttaaaaaaa-tgatttattgagagtatcaagac |
203064 |
T |
|
| Q |
323 |
tcattcattatgctcatttacaacacaatctcaaacatctttgtgttccaccatcatcaattggtgtgacttatattcccttttctcttctctttccact |
422 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
203065 |
tcattcactatgctcatttacaacacaatctcaaacatctttgtgttccaccatcatcaattggtgtgacttatattcccttttctcttctctttccact |
203164 |
T |
|
| Q |
423 |
tgacttggttgatg |
436 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
203165 |
tgacttggttgatg |
203178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 314 - 514
Target Start/End: Original strand, 28712 - 28912
Alignment:
| Q |
314 |
tatcaagactcattcattatgctcatttacaacacaatctcaaacatctttgtgttccaccatcatcaattggtgtgacttatattcccttttctcttct |
413 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28712 |
tatcaagactcattcactatgctgatttacaacacaatcttagacatctttgtgttccaccatcatcaattggtgtgacttatattcccttttctcttat |
28811 |
T |
|
| Q |
414 |
ctttccacttgacttggttgatgaagtattcacagctttcaaacaatcctatacaaaacgataaaattaaatttaaaacaaattttgaatttcctttgtg |
513 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| || ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
28812 |
ctttccacttgacttggttgatggagtattcacatctctcaaacaattctatacaaaacgataaaattaaaattaaaacaaactttgaatttcctttgtg |
28911 |
T |
|
| Q |
514 |
t |
514 |
Q |
| |
|
| |
|
|
| T |
28912 |
t |
28912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 3e-83; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 314 - 514
Target Start/End: Complemental strand, 29157157 - 29156957
Alignment:
| Q |
314 |
tatcaagactcattcattatgctcatttacaacacaatctcaaacatctttgtgttccaccatcatcaattggtgtgacttatattcccttttctcttct |
413 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29157157 |
tatcaagactcattcactatgctgatttacaacacaatcttagacatctttgtgttccaccatcatcaattggtgtgacttatattcccttttctcttat |
29157058 |
T |
|
| Q |
414 |
ctttccacttgacttggttgatgaagtattcacagctttcaaacaatcctatacaaaacgataaaattaaatttaaaacaaattttgaatttcctttgtg |
513 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| || ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
29157057 |
ctttccacttgacttggttgatggagtattcacatctctcaaacaattctatacaaaacgataaaattaaaattaaaacaaactttgaatttcctttgtg |
29156958 |
T |
|
| Q |
514 |
t |
514 |
Q |
| |
|
| |
|
|
| T |
29156957 |
t |
29156957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 318 - 513
Target Start/End: Original strand, 39482643 - 39482838
Alignment:
| Q |
318 |
aagactcattcattatgctcatttacaacacaatctcaaacatctttgtgttccaccatcatcaattggtgtgacttatattcccttttctcttctcttt |
417 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39482643 |
aagactcatttaccatgctcatttacaacacaatctcaaacatcttagtgttccactatcatcaattggtgtgacttatattcccttttctcttcttttt |
39482742 |
T |
|
| Q |
418 |
ccacttgacttggttgatgaagtattcacagctttcaaacaatcctatacaaaacgataaaattaaatttaaaacaaattttgaatttcctttgtg |
513 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
39482743 |
ccacttgacttggttgatggagtattcacaactttcaaacaatcctatacaaaaagataaaattaaaattaaaacaaactttgaatttcctttgtg |
39482838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 15996193 - 15996369
Alignment:
| Q |
1 |
acgaaaaatgaaggagatgccatttcagagaatcccaatgcaggaagagctacatgagagacaatnnnnnnnnnnnnnnnnntttaagatgaatgtggga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
15996193 |
acgaaaaatgaaggagatgccatttcagagaatcccaatgcaggaagagctacgtgagagacaatgagagagagagagag--tttaagatgaatgtggga |
15996290 |
T |
|
| Q |
101 |
aatggcagagaagacattggaaaatgagagttactattaaccttgaaaatgaaaaaggggtgactactaatgctgatta |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
15996291 |
aatggcagagaagacattggaaaatgagagttactattaaccttgaaaatgaaaaaggtgtaactacgaatgctgatta |
15996369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 505
Target Start/End: Complemental strand, 16496820 - 16496630
Alignment:
| Q |
315 |
atcaagactcattcattatgctcatttacaacacaatctcaaacatctttgtgttccaccatcatcaattggtgtgacttatattcccttttctcttctc |
414 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||| || |||| ||| |||| ||| || | |
|
|
| T |
16496820 |
atcaagactcgttcacgttgctcctttacaacacaatcttaaacatctttgtgttccgtcatcatcaaactatgaaacttctatgccctaagctcatccc |
16496721 |
T |
|
| Q |
415 |
tttccacttgacttggttgatgaagtattcacagctttcaaacaatcctatacaaaacgataaaattaaatttaaaacaaattttgaattt |
505 |
Q |
| |
|
|||||| ||||||||| |||| | |||| || ||||||| || |||||||||||| |||||| ||||| |||||||||| |||||||| |
|
|
| T |
16496720 |
tttccatctgacttggtagatggattattagcatctttcaagcactcctatacaaaatgataaatttaaaattaaaacaaacattgaattt |
16496630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 284
Target Start/End: Original strand, 39482583 - 39482615
Alignment:
| Q |
252 |
atatagaggtggaagacaatgcattagaagaat |
284 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
39482583 |
atatagaggtggaagacaatacattagaagaat |
39482615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 314 - 466
Target Start/End: Original strand, 261325 - 261477
Alignment:
| Q |
314 |
tatcaagactcattcattatgctcatttacaacacaatctcaaacatctttgtgttccaccatcatcaattggtgtgacttatattcccttttctcttct |
413 |
Q |
| |
|
|||||| ||||||||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||||| |||||| |||| | |||||||||||| | |
|
|
| T |
261325 |
tatcaaaactcattcactatgctcgtttacaacacaatcttagacatctttgtgttccaccatcatcaattcgtgtgatttatgtacccttttctcttat |
261424 |
T |
|
| Q |
414 |
ctttccacttgacttggttgatgaagtattcacagctttcaaacaatcctata |
466 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
261425 |
ctttccacttgacttggttgatggagtattcacatctttcaaacaatcctata |
261477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 505
Target Start/End: Original strand, 151479 - 151669
Alignment:
| Q |
315 |
atcaagactcattcattatgctcatttacaacacaatctcaaacatctttgtgttccaccatcatcaattggtgtgacttatattcccttttctcttctc |
414 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||| || |||| ||| |||| ||| || | |
|
|
| T |
151479 |
atcaagactcgttcacgttgctcctttacaacacaatcttaaacatctttgtgttccgtcatcatcaaactatgaaacttctatgccctaagctcatccc |
151578 |
T |
|
| Q |
415 |
tttccacttgacttggttgatgaagtattcacagctttcaaacaatcctatacaaaacgataaaattaaatttaaaacaaattttgaattt |
505 |
Q |
| |
|
|||||| ||||||||| |||| | |||| || ||||||| || |||||||||||| |||||| ||||| |||||||||| |||||||| |
|
|
| T |
151579 |
tttccatctgacttggtagatggattattagcatctttcaagcactcctatacaaaatgataaatttaaaattaaaacaaacattgaattt |
151669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 505
Target Start/End: Original strand, 13661717 - 13661907
Alignment:
| Q |
315 |
atcaagactcattcattatgctcatttacaacacaatctcaaacatctttgtgttccaccatcatcaattggtgtgacttatattcccttttctcttctc |
414 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||| || |||| ||| |||| ||| || | |
|
|
| T |
13661717 |
atcaagactcgttcacgttgctcctttacaacacaatcttaaacatctttgtgttccgtcatcatcaaactatgaaacttctatgccctaagctcatccc |
13661816 |
T |
|
| Q |
415 |
tttccacttgacttggttgatgaagtattcacagctttcaaacaatcctatacaaaacgataaaattaaatttaaaacaaattttgaattt |
505 |
Q |
| |
|
|||||| ||||||||| |||| | |||| || ||||||| || |||||||||||| |||||| ||||| |||||||||| |||||||| |
|
|
| T |
13661817 |
tttccatctgacttggtagatggattattagcatctttcaagcactcctatacaaaatgataaatttaaaattaaaacaaacattgaattt |
13661907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 37341799 - 37341884
Alignment:
| Q |
86 |
aagatgaatgtgggaaatggcagagaagacattggaaaatgagag---ttac-tattaaccttgaaaatgaaaaaggggtgactac |
167 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| |||||||||| | || ||||||||||| |||||||||||| |||||||| |
|
|
| T |
37341799 |
aagatgaatgtggaaaatggcatagaagacattgaaaaatgagagagttgacatattaaccttggaaatgaaaaaggtgtgactac |
37341884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37341720 - 37341757
Alignment:
| Q |
1 |
acgaaaaatgaaggagatgccatttcagagaatcccaa |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37341720 |
acgaaaaatgaaggagatgccatttcagagactcccaa |
37341757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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