View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14805_high_6 (Length: 521)

Name: NF14805_high_6
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14805_high_6
NF14805_high_6
[»] chr4 (2 HSPs)
chr4 (17-499)||(32230942-32231424)
chr4 (71-135)||(32230646-32230710)
[»] chr2 (2 HSPs)
chr2 (44-129)||(11393475-11393561)
chr2 (44-129)||(11410136-11410222)
[»] chr5 (5 HSPs)
chr5 (45-123)||(18852897-18852973)
chr5 (46-127)||(37618950-37619032)
chr5 (93-126)||(29115372-29115405)
chr5 (205-293)||(19201882-19201970)
chr5 (47-122)||(26516180-26516256)
[»] chr6 (1 HSPs)
chr6 (91-123)||(26694213-26694245)


Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 17 - 499
Target Start/End: Original strand, 32230942 - 32231424
Alignment:
Q  17 attaggaaattatatgattggcgcttaatatagaaatagcttagacatatgcaattatacgataaacacttgtgtgtaagcgcttaattaaagtgtttat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32230942 attaggaaattatatgattggcgcttaatatagaaatagcttagacatatgcaattatacgataaacacttgtgtgtaagcgcttaattaaagtgtttat 32231041  T
Q  117 ccaaacatggcataaatatgaaacactacatttcaatttagacattaaaataatcaatatggttgagttgaatagcaaatgaaaatctaacctcatgctt 216  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32231042 ccaaacatggcataaatatgaaacgctacatttcaatttagacattaaaataatcaatatggttgagttgaatagcaaatgaaaatctaacctcatgctt 32231141  T
Q  217 atttagcttgcgtcttgctttcatcttcttcctcttttcccatgaatctattgtctctaacaacttctcatacctgacaaattaataatatttttattgc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32231142 atttagcttgcgtcttgctttcatcttcttcctcttttcccatgaatctattgtctctaacaacttctcatacctgacaaattaataatatttttattgt 32231241  T
Q  317 ttccaatgcataaagtcatagattcacaatattcatatagtgttattgaaatatatgattgctattcttatgtatctacctttctttgatcttttttagc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  32231242 ttccaatgcataaagtcatagattcacaatattcatatagtgttattgaaaaatataattgctatgcttatgtatctacctttctttgatcttttttagc 32231341  T
Q  417 tcttccctttcccaagcatctgcttttgcttctgtttcacttggtctagttgatggtctggcagctgttgaagtctgcctgat 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32231342 tcttccctttcccaagcatctgcttttgcttctgtttcacttggtctagttgatggtctggcagctgttgaagtctgcctgat 32231424  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 32230646 - 32230710
Alignment:
Q  71 ttatacgataaacacttgtgtgtaagcgcttaattaaagtgtttatccaaacatggcataaatat 135  Q
    ||||| ||||||||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||    
T  32230646 ttatatgataaacacttgtgtataagctcttaattaaagtggttatccaaacatggcctaaatat 32230710  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 11393475 - 11393561
Alignment:
Q  44 atatagaaatagcttagacatatgcaattatacgataaacacttgtg-tgtaagcgcttaattaaagtgtttatccaaacatggcat 129  Q
    |||||||||||||||| | ||| ||| ||||| |||||||||||||| | |||| ||||||||||  |||||||||||||| |||||    
T  11393475 atatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaagctgtttatccaaacaaggcat 11393561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 11410136 - 11410222
Alignment:
Q  44 atatagaaatagcttagacatatgcaattatacgataaacacttgtg-tgtaagcgcttaattaaagtgtttatccaaacatggcat 129  Q
    |||||||||||||||| | ||| ||| ||||| |||||||||||||| | |||| ||||||||||  |||||||||||||| |||||    
T  11410136 atatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaagctgtttatccaaacaaggcat 11410222  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 18852973 - 18852897
Alignment:
Q  45 tatagaaatagcttagacatatgcaattatacgataaacacttgtgtgtaagcgcttaattaaagtgtttatccaaaca 123  Q
    |||| |||||||||| ||||| ||| ||| ||||||||| ||| |||  ||||||||||||||  ||||||||||||||    
T  18852973 tatataaatagcttatacataagcacttacacgataaacccttatgt--aagcgcttaattaagttgtttatccaaaca 18852897  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 37618950 - 37619032
Alignment:
Q  46 atagaaatagcttagacatatgcaattatacgataaacacttgtg-tgtaagcgcttaattaaagtgtttatccaaacatggc 127  Q
    |||||||||||||   |||| ||| ||||||||||||||||| || |||| | ||||||||||  |||| |||||||||||||    
T  37618950 atagaaatagcttttgcataagcacttatacgataaacacttatgctgtatgtgcttaattaagttgttcatccaaacatggc 37619032  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 29115372 - 29115405
Alignment:
Q  93 taagcgcttaattaaagtgtttatccaaacatgg 126  Q
    ||||||| ||||||||||||||||||||||||||    
T  29115372 taagcgcgtaattaaagtgtttatccaaacatgg 29115405  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 19201882 - 19201970
Alignment:
Q  205 aacctcatgcttatttagcttgcgtcttgctttcatcttcttcctcttttcccatgaatctattgtctctaacaacttctcatacctga 293  Q
    |||||| |||||  ||||||||||| ||||||||||| ||||| | | |||||| ||||||||   | ||  |||||||||||||||||    
T  19201882 aacctcttgcttcattagcttgcgttttgctttcatcctcttcttgtcttcccaggaatctatcaacactttcaacttctcatacctga 19201970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 26516256 - 26516180
Alignment:
Q  47 tagaaatagcttagacatatgcaattatacgataaacacttgtg-tgtaagcgcttaattaaagtgtttatccaaac 122  Q
    ||||||||||||| ||||| ||| ||||| ||||| | ||| || | |||||||||||||||  |||||||||||||    
T  26516256 tagaaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaac 26516180  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 26694245 - 26694213
Alignment:
Q  91 tgtaagcgcttaattaaagtgtttatccaaaca 123  Q
    |||||||||||||||||| ||||||||||||||    
T  26694245 tgtaagcgcttaattaaactgtttatccaaaca 26694213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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