View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14805_high_7 (Length: 439)
Name: NF14805_high_7
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Original strand, 34274036 - 34274449
Alignment:
| Q |
10 |
agaagtcgaaaacgggcaagttggaggttaaaatgttatgttgatgattccttctcaacatcccgcaatagagttgggataggtatgtgtattcgagatg |
109 |
Q |
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| T |
34274036 |
agaaggcgaaaacgggcaagttggaggttaaaatgttatgttgatgattccttctcaacatcccgcaatagagctgggatagatatgtgtattcgagatg |
34274135 |
T |
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| Q |
110 |
aggaagaatggtatgtgctgtccaaaactctacggattactctcttatgttatgtgaaagttggcgaagctttgggaccatatcacactatgttgtggat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34274136 |
aggaagaatggtatgtgctgtccaaaactctacggattactcccttatgttctgtgaaagttggcgaagctttgggaccatatcacactatgttgtggat |
34274235 |
T |
|
| Q |
210 |
taatgacatacaattaacaaatgtcgacatcgaagtggactcaaaggaagtcattgattattatgttaggaatagaggtgatagtaccgaatttagttta |
309 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34274236 |
taatgacatacaattaacgaatgtcaacatcgaagtggactcaaaggaagtcattgattattatgttaggaatagaggtgatagtaccgaatttagttta |
34274335 |
T |
|
| Q |
310 |
atttattaggagacaagcgaatgaggttgttcatgctttaacacatatagccacatctcgtgtatcacattgtattaccaatctgatatctattgaaatg |
409 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34274336 |
atttattaggagacaagcgaatgaggtcgttcatgctttaacacatatagccacatctcgtgtatcacattgtattaccaatctgatatctattgaaatg |
34274435 |
T |
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| Q |
410 |
ctataagcacattt |
423 |
Q |
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| T |
34274436 |
ctataagcacattt |
34274449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 5299278 - 5299125
Alignment:
| Q |
32 |
ggaggttaaaatgttatgttgatgattccttctcaacatcccgcaatagagttgggataggtatgtgtattcgagatgaggaagaatggtatgtgctgtc |
131 |
Q |
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||||| |||||||| || |||||| || ||||||||||||| | ||||||| |||||||||||||||||| |||||||||||| || ||||||||||| |
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| T |
5299278 |
ggaggctaaaatgtaatattgatgcgtcattctcaacatccctcgatagagtagggataggtatgtgtatttgagatgaggaagggtgttatgtgctgtc |
5299179 |
T |
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| Q |
132 |
caaaactctacggattactctcttatgttatgtgaaagttggcgaagctttggg |
185 |
Q |
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|||| |||| ||||||| | |||||| | ||| ||||||||||||||||||| |
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| T |
5299178 |
taaaattctatggattacacccttatgctcggtggaagttggcgaagctttggg |
5299125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 292
Target Start/End: Complemental strand, 8860479 - 8860279
Alignment:
| Q |
92 |
gtatgtgtattcgagatgaggaagaatggtatgtgctgtccaaaactctacggattactctcttatgttatgtgaaagttggcgaagctttgggaccata |
191 |
Q |
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|||||||||||||||||| ||||| || |||||| |||| ||||||||| || |||| || ||||| || ||| ||||||||||||||||||| ||| |
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| T |
8860479 |
gtatgtgtattcgagatgtggaagggtgttatgtgttgtctaaaactctatggcttacacttttatgctacgtggaagttggcgaagctttggggttata |
8860380 |
T |
|
| Q |
192 |
tcacactatgttgtggattaatgacatacaattaacaaatgtcgacatcgaagtggactcaaaggaagtcattgattattatgttaggaatagaggtgat |
291 |
Q |
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||| ||||| |||||| ||||| || ||||| | ||| | || | |||||||||| ||| ||||| |||||||||||| ||||||||||||||| |
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| T |
8860379 |
tcaggctatgaagtggatcaatgagctagaattagcgaatattgattttgaagtggactggaagaaagtcgttgattattatgcaaggaatagaggtgat |
8860280 |
T |
|
| Q |
292 |
a |
292 |
Q |
| |
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| |
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| T |
8860279 |
a |
8860279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 8860563 - 8860495
Alignment:
| Q |
40 |
aaatgttatgttgatgattccttctcaacatcccgcaatagagttgggataggtatgtgtattcgagat |
108 |
Q |
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|||||| ||||||||| || |||||||||||| ||||||||| |||||| ||||||||||||||||| |
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| T |
8860563 |
aaatgtaatgttgatgtgtcattctcaacatccatcaatagagtagggataagtatgtgtattcgagat |
8860495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 11123621 - 11123653
Alignment:
| Q |
311 |
tttattaggagacaagcgaatgaggttgttcat |
343 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
11123621 |
tttattaggagacaagcaaatgaggttgttcat |
11123653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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