View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14805_low_1 (Length: 857)
Name: NF14805_low_1
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 840
Target Start/End: Original strand, 25716397 - 25717261
Alignment:
| Q |
1 |
aggtgagttttgagtctatagttaggttttgactttattctttcaaaattgaatcattttttaattgacatttagtggttctaggttgtttggaaaagtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
25716397 |
aggtgagttttgagtctatagttaggttttgactttattctttcaaaattgaatcattttttaattgacgtttagtggttcttggttgtttggaaaagtt |
25716496 |
T |
|
| Q |
101 |
caaatttgggttctgtcttgttttgttaaaaaggagaaaaagtgcaatttgtgtttgttgtgtagtgctcttataaagtgttaactaaaaagcatatgct |
200 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
25716497 |
caaatttgggttctgtcttgttttgtttaaaaggaaaaaaagtgcaatttgtgtttgttgtgtagtgctcttataaagtgttaactaaaaagcaaatggt |
25716596 |
T |
|
| Q |
201 |
atggcaccacgttaacgataatctttgatactatattttaattggtattattcttattgatcgatatacgctgatgcatgtttggattaacggtgggatg |
300 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25716597 |
gtggcaccacgttatcgataatctttgatactatattttaattggtattgttcttattgatt---------tgatgcatgtttggattaacggtgggatg |
25716687 |
T |
|
| Q |
301 |
gtcagaatcaaggtgaaccaccacgattttgacaatagttacacttagtgtgaacaaaatcacactgttgccgtgattttgagaa--------------- |
385 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||| ||||||||||||| |
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| T |
25716688 |
gtcagaatcaaggtgaaccaccgcgattttgacaatagttacaattagtgtgaacaaaatcacaccgctgctgtgattttgagaagcccatgattttgag |
25716787 |
T |
|
| Q |
386 |
--gcccggtgtcaatctaaacataatctaaccatgtgt-------------------acatagacatgtcgacgtcagtagtagttatttgacaaaatga |
464 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
25716788 |
aagcccagtgtcaatctaaacataatctaaccatgtgtttgtgggacattgacacggacatcgacatgtcgacatcagtagtagttatttgacaaaatga |
25716887 |
T |
|
| Q |
465 |
cataattgaacataatgacttgtatctgtgtcgtgtcagtgtcaaacactgacatatgttggacacctgacacaccttcgatcagaagtgtcaatgctac |
564 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |
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| T |
25716888 |
cataattgaacataatgacttgtatctgtgtcgtgtcagt-----acactgacatatgttggacatctgacacaccttcaatcagaagtgtcaatactac |
25716982 |
T |
|
| Q |
565 |
ttggaattgggttgagcggtgaattactcttaccgtgactttagagctctccaatgatgaattttaaaagctcaaatgtgtagctcctgacccaccatga |
664 |
Q |
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| |||||| ||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| |||||||||||||||||| |||||||||| | |
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| T |
25716983 |
tgggaattaggttgagcggtgaattactcttaccgtgactttggagctccccaatggtgaattttagaagctcaaatgtgtagcttctgacccacc---a |
25717079 |
T |
|
| Q |
665 |
ttttggtgttttcc-aaacacacaccaagtatgattgtcttattgaggattgttgttgatgagtcaattgggattgttgtttttgttt-tatttcaaggt |
762 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
25717080 |
ttttggtgttttccaaaacacacaccaagtatgattgtcttattgaggattgttgttgatgagtcaattgggattgttgtttttgtttgtatttctaggt |
25717179 |
T |
|
| Q |
763 |
cgaatttgttcgttcttaggacat--ttaaggtttaactggagcaagttggc--ttagtggcaccttactaggtttgtgtag |
840 |
Q |
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||||||||||| |||||||||||| |||||||||||||| | ||||||||| |||||||||||||||||||||||||||| |
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| T |
25717180 |
cgaatttgttctttcttaggacattattaaggtttaactgaaacaagttggcttttagtggcaccttactaggtttgtgtag |
25717261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 556
Target Start/End: Original strand, 11203068 - 11203103
Alignment:
| Q |
521 |
tgttggacacctgacacaccttcgatcagaagtgtc |
556 |
Q |
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||||||||||| |||||||||||||||||||||||| |
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| T |
11203068 |
tgttggacaccggacacaccttcgatcagaagtgtc |
11203103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 560
Target Start/End: Complemental strand, 29480921 - 29480864
Alignment:
| Q |
503 |
gtgtcaaacactgacatatgttggacacctgacacaccttcgatcagaagtgtcaatg |
560 |
Q |
| |
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|||||| |||| |||| |||||||| ||| |||||||||||||||| |||| |||||| |
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| T |
29480921 |
gtgtcagacacggacagatgttggataccagacacaccttcgatcataagtctcaatg |
29480864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 555
Target Start/End: Original strand, 264658 - 264721
Alignment:
| Q |
492 |
gtgtcgtgtcagtgtcaaacactgacatatgttggacacctgacacaccttcgatcagaagtgt |
555 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||| |||||||||| || || || |||||||| |
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| T |
264658 |
gtgtcgtgtcagtgtcgaacacaaacatatgttgggcacctgacacgccatctatgagaagtgt |
264721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 556
Target Start/End: Complemental strand, 10151209 - 10151156
Alignment:
| Q |
503 |
gtgtcaaacactgacatatgttggacacctgacacaccttcgatcagaagtgtc |
556 |
Q |
| |
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|||||| ||||||||| ||||| || ||| ||||||||||| |||||||||||| |
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| T |
10151209 |
gtgtcagacactgacacatgttagagaccagacacaccttccatcagaagtgtc |
10151156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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