View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14805_low_10 (Length: 398)
Name: NF14805_low_10
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_low_10 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 10 - 381
Target Start/End: Complemental strand, 48492416 - 48492044
Alignment:
| Q |
10 |
gataattctagaaataggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnn-tggaggtaatcttgctgacagtagtatta |
108 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
48492416 |
gataattctagaaataggttgttagtttttggtgatttcgatttgattttgggtcaagctgaaaaaaaaaatggaggtaatcttgctgacagtagtatta |
48492317 |
T |
|
| Q |
109 |
caaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcatcacataaaagctagattggatggattctta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48492316 |
caaaccggttcaaagacactatccaacagtgtggcttaactggtttgggctatattggggatattttcatcacataaaagctagattggatggattctta |
48492217 |
T |
|
| Q |
209 |
gctagcaatcaatggttgtatatgttccctagtttctgatgcatttcttttgttatttctcttggttttgtgtcatatctcatcagtgtgttgggtttgc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48492216 |
gctagcaatcaatggttgtatatgttccctagtttctaatgcatttcttttgttatttctcttggttttgtgtcatatctcatcagtgtgttgggtttgc |
48492117 |
T |
|
| Q |
309 |
agcattttcggtagtattctgttttggnnnnnnnccttttggactgtgtggtgattattagcagcttccgaat |
381 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
48492116 |
agcatttttggtagtattctgttttggtttttttgcttttggactgtgtggtgattattagcagcttccgaat |
48492044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 19907577 - 19907812
Alignment:
| Q |
10 |
gataattctagaaataggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnntggaggtaatcttgctgacagtagtattac |
109 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||| ||||| ||||| ||||||||| ||||||||||| | ||| ||||||||||| |
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|
| T |
19907577 |
gataattctagaaataggtggttagtttttggtgatttcaatttggttttgtgtcaagctgggaaaaaaatggaggtaatcctattgatagtagtattac |
19907676 |
T |
|
| Q |
110 |
aaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcatcacataaaagctagattggatggattcttag |
209 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
19907677 |
taaccagttcaaagacactatccagcagcgtggctttaatgatttgggctacattggggatattttcatcacataaaagctagattggacagattcttag |
19907776 |
T |
|
| Q |
210 |
ctagcaatcaatggttgtatatgttccctagtttct |
245 |
Q |
| |
|
| ||||||||||||| ||||||||||| ||||| |
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|
| T |
19907777 |
tttttaatcaatggttgtttatgttccctaatttct |
19907812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 27692522 - 27692729
Alignment:
| Q |
10 |
gataattctagaaataggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnntggaggtaatcttgctgacagtagtattac |
109 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||||| ||||| ||||| ||||||||| ||||||||||| | ||| ||||||||||| |
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|
| T |
27692522 |
gataattctagaaataggtggttagtttttgttgatttcaatttggttttgtgtcaagctggaaaaaaaatggaggtaatcctattgatagtagtattac |
27692621 |
T |
|
| Q |
110 |
aaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcatcacataaaagctagattggatggattcttag |
209 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27692622 |
taaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcatcacataaaagctagattggacagattcttag |
27692721 |
T |
|
| Q |
210 |
ctagcaat |
217 |
Q |
| |
|
||||||| |
|
|
| T |
27692722 |
ttagcaat |
27692729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 44370999 - 44371206
Alignment:
| Q |
10 |
gataattctagaaataggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnntggaggtaatcttgctgacagtagtattac |
109 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||||| ||||| ||||| ||||||||| ||||||||||| | ||| ||||||||||| |
|
|
| T |
44370999 |
gataattctagaaataggtggttagtttttgttgatttcaatttggttttgtgtcaagctggaaaaaaaatggaggtaatcctattgatagtagtattac |
44371098 |
T |
|
| Q |
110 |
aaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcatcacataaaagctagattggatggattcttag |
209 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44371099 |
taaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcatcacataaaagctagattggacagattcttag |
44371198 |
T |
|
| Q |
210 |
ctagcaat |
217 |
Q |
| |
|
||||||| |
|
|
| T |
44371199 |
ttagcaat |
44371206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 44379853 - 44380060
Alignment:
| Q |
10 |
gataattctagaaataggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnntggaggtaatcttgctgacagtagtattac |
109 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||||| ||||| ||||| ||||||||| ||||||||||| | ||| ||||||||||| |
|
|
| T |
44379853 |
gataattctagaaataggtggttagtttttgttgatttcaatttggttttgtgtcaagctggaaaaaaaatggaggtaatcctattgatagtagtattac |
44379952 |
T |
|
| Q |
110 |
aaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcatcacataaaagctagattggatggattcttag |
209 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44379953 |
taaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcatcacataaaagctagattggacagattcttag |
44380052 |
T |
|
| Q |
210 |
ctagcaat |
217 |
Q |
| |
|
||||||| |
|
|
| T |
44380053 |
ttagcaat |
44380060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 23559566 - 23559359
Alignment:
| Q |
10 |
gataattctagaaataggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnntggaggtaatcttgctgacagtagtattac |
109 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||||| ||||| ||||| ||||||||| ||||||||||| | ||| ||||||||||| |
|
|
| T |
23559566 |
gataattctagaaataggtggttagtttttgttgatttcaatttggttttgtgtcaagctggaaaaaaaatggaggtaatcctattgatagtagtattac |
23559467 |
T |
|
| Q |
110 |
aaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcatcacataaaagctagattggatggattcttag |
209 |
Q |
| |
|
|||| |||||||||||||||||| | | ||||||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23559466 |
taaccagttcaaagacactatccagcggcgtggctttaatgatttgagctacattggggatattttcatcacataaaagctagattggacagattcttag |
23559367 |
T |
|
| Q |
210 |
ctagcaat |
217 |
Q |
| |
|
||||||| |
|
|
| T |
23559366 |
ttagcaat |
23559359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 32636253 - 32636290
Alignment:
| Q |
344 |
cttttggactgtgtggtgattattagcagcttccgaat |
381 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32636253 |
cttttggattgtgtggtgattattagcagcttccgaat |
32636290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 32636212 - 32636244
Alignment:
| Q |
10 |
gataattctagaaataggttgtcagtttttggt |
42 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
32636212 |
gataattctagaaataggttgttagtttttggt |
32636244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 20714386 - 20714593
Alignment:
| Q |
10 |
gataattctagaaataggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnntggaggtaatcttgctgacagtagtattac |
109 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||||| ||||| ||||| ||||||||| ||||||||||| | ||| ||||||||||| |
|
|
| T |
20714386 |
gataattctagaaataggtggttagtttttgttgatttcaatttggttttgtgtcaagctggaaaaaaaatggaggtaatcctattgatagtagtattac |
20714485 |
T |
|
| Q |
110 |
aaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcatcacataaaagctagattggatggattcttag |
209 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20714486 |
taaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcatcacataaaagctagattggacagattcttag |
20714585 |
T |
|
| Q |
210 |
ctagcaat |
217 |
Q |
| |
|
||||||| |
|
|
| T |
20714586 |
ttagcaat |
20714593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 49227723 - 49227930
Alignment:
| Q |
10 |
gataattctagaaataggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnntggaggtaatcttgctgacagtagtattac |
109 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||||| ||||| ||||| ||||||||| ||||||||||| | ||| ||||||||||| |
|
|
| T |
49227723 |
gataattctagaaataggtggttagtttttgttgatttcaatttggttttgtgtcaagctggaaaaaaaatggaggtaatcctattgatagtagtattac |
49227822 |
T |
|
| Q |
110 |
aaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcatcacataaaagctagattggatggattcttag |
209 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49227823 |
taaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcatcacataaaagctagattggacagattcttag |
49227922 |
T |
|
| Q |
210 |
ctagcaat |
217 |
Q |
| |
|
||||||| |
|
|
| T |
49227923 |
ttagcaat |
49227930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 15857387 - 15857343
Alignment:
| Q |
10 |
gataattctagaaataggttgtcagtttttggtgatttcgatttg |
54 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
15857387 |
gataattctagaaataggtggttagtttttggtgatttcaatttg |
15857343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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