View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14805_low_11 (Length: 382)
Name: NF14805_low_11
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_low_11 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 47759430 - 47759794
Alignment:
| Q |
18 |
tcacacaccttcgagatttatccttgccttccttttccttaagcatatgcaaataaaaattagcagggcggnnnnnnnnnnnnnnnnngtcggcacaact |
117 |
Q |
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| T |
47759430 |
tcacacaccttcgagatttatccttgccttccttttccttaagcatatgcaaataaaaattagcagggcggcaacaacaacaacaacagtcggcacaact |
47759529 |
T |
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| Q |
118 |
atggcgatggtagtatgtgatgatttgcttttttctgcaaaatgagacatttcaaagttaagagtaaaataataccaacaaacaaggtctataacgacta |
217 |
Q |
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| T |
47759530 |
atggcgatggtagtatgtgatgatttgcttttttctgcaaaatgagacatttcaaagttaagagtaaaataataccaacaaacaaggtctataacgacta |
47759629 |
T |
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| Q |
218 |
actaatgagaaaaagtcaaagataagaacaagtaaaacatgaccacctaattgtaaatatgttgtaacgagcaattaagatgattaattaatgacaatta |
317 |
Q |
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| T |
47759630 |
actaatgagaaaaagtcaaagataagaacaagtaaaacatgaccacctaattgtaaatatgttgtaacgagcaattaagatgattaattaatgacaatta |
47759729 |
T |
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| Q |
318 |
gtaattaccttcttctgatggggaggtttcacctgggtctattgcaggtgtaggatcatagaagc |
382 |
Q |
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| T |
47759730 |
gtaattaccttcttctgatggggaggtttcacctgggtctattgcaggtgtaggatcatagaagc |
47759794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 47717314 - 47717681
Alignment:
| Q |
18 |
tcacacaccttcgagatttatccttgccttccttttccttaagcatatgcaaataaaaattagcagggcggnnnnnnnnnnnnnnnnngtcggcacaact |
117 |
Q |
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| T |
47717314 |
tcacataccttcgagatttatctttgccttccttttccttacgcatatgcaaatgaaaattagcagggaagcaacaacaaccacaacagtcggcacaact |
47717413 |
T |
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| Q |
118 |
atggcgatggtagtatgtgatgatttgcttttttctgcaaaatgagacatttcaaag-ttaaga---gtaaaataataccaacaaacaaggtctataacg |
213 |
Q |
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| T |
47717414 |
atggcgatggtagtatgtgatgatttgcttttttctgtaaaatgatacatttcaaagattaagaatagtaaaataataccaacaaacaaggtctataatg |
47717513 |
T |
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| Q |
214 |
actaactaatgagaaaaagtcaaagataagaacaagtaaaacatgaccacctaattgtaaatatgttgtaacgagcaattaagatgattaattaatgaca |
313 |
Q |
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| T |
47717514 |
actaactaatgagaaaaactccaagaaaggaacgagtaaaacaagaccacctaattgtaaatatgttgtaacgagcaattaagatgattaattaacgaca |
47717613 |
T |
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| Q |
314 |
attagtaattaccttcttctgatggggaggtttcacctgggtctattgcaggtgtaggatcatagaag |
381 |
Q |
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| T |
47717614 |
attagtaattaccttcttctgatggggaggtttcacctgggtctattacaggtgtaggatcatagaag |
47717681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 24 - 381
Target Start/End: Original strand, 47745110 - 47745470
Alignment:
| Q |
24 |
accttcgagatttatccttgccttccttttccttaagcatatgcaaataaaaattagcagg---gcggnnnnnnnnnnnnnnnnngtcggcacaactatg |
120 |
Q |
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| T |
47745110 |
accttggagatttatctttgccttccttttccttaagcatatgcaaatgaaaattagcaggccagcagcagcaacaacaacaacagtcggcacaactgtg |
47745209 |
T |
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| Q |
121 |
gcgatggtagtatgtgatgatttgcttttttctgcaaaatgagacatttcaaag-ttaag---agtaaaataataccaacaaacaaggtctataacgact |
216 |
Q |
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| T |
47745210 |
gcgat---agtatgtgatgatttgcttttttctgtaaaatgatacatttcaaagattaagaatagtaaaatattaccaacaaacaa-gtctacaacgact |
47745305 |
T |
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| Q |
217 |
aactaatgagaaaaagtcaaagataagaacaagtaaaacatgaccacctaattgtaaatatgttgtaacgagcaattaag-atgattaattaatgacaat |
315 |
Q |
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| T |
47745306 |
aactaatgaataaaatgccaagataagaacaagtaaaacaaggtaacctaactgtaatcaccatgt----agtaattaagtatgattaggtaatgacaat |
47745401 |
T |
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| Q |
316 |
tagta---attaccttcttctgatggggaggtttcacctgggtctattgcaggtgtaggatcatagaag |
381 |
Q |
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| T |
47745402 |
tagtaattattaccttcttctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaag |
47745470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 109 - 233
Target Start/End: Original strand, 47712623 - 47712750
Alignment:
| Q |
109 |
ggcacaactatggcgatggtagtatgtgatgatttgcttttttctgcaaaatgagacatttcaaag-ttaag---agtaaaataataccaacaaacaagg |
204 |
Q |
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| T |
47712623 |
ggcacaactatggcgacggtagtatgtgatgatttgcttttttctgcaaaatgagacatttcaaagattaagaatagtaaaataataccaaccgac-atg |
47712721 |
T |
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| Q |
205 |
tctataacgactaactaatgagaaaaagt |
233 |
Q |
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| T |
47712722 |
tctataacgactaactaatgagaacaagt |
47712750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 47712559 - 47712603
Alignment:
| Q |
42 |
tgccttccttttccttaagcatatgcaaataaaaattagcagggc |
86 |
Q |
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| T |
47712559 |
tgccttccttttccttaagcatatgcaaatgaaaattagcagggc |
47712603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 382
Target Start/End: Original strand, 47712793 - 47712879
Alignment:
| Q |
297 |
atgattaa-ttaatgacaattagtaattaccttcttctgatggggaggtttcacctgggtctattgcaggtgtaggatcatagaagc |
382 |
Q |
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| T |
47712793 |
atgattaagttaatgacaatcagtaattaccttcttctgatggggagtgttcatcttggtttattactgttgtaggatcagagaagc |
47712879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 381
Target Start/End: Original strand, 47704799 - 47704880
Alignment:
| Q |
297 |
atgattaattaatgacaattagtaattaccttcttctgatggggaggtttcacctgggtctattgcaggtgtaggatcatagaag |
381 |
Q |
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| T |
47704799 |
atgattaactaatgaaaattactaatcaccttc---tgatggggaggtttcatctgggtctattactgtcgtaggaccatagaag |
47704880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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