View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14805_low_12 (Length: 381)
Name: NF14805_low_12
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_low_12 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 166146 - 165782
Alignment:
| Q |
17 |
acttctaaccattttggagctcctgctggctcccaagctgccaatccaccatttttactctacactaattaaaaaataaagttgtgtcaaaattaaacca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
166146 |
acttctaaccattttggagctcctgctggctcccaagctgccaatccaccatttttactctacactaattaaaaaataaagttgtgtcaaaattaaacca |
166047 |
T |
|
| Q |
117 |
ggtagcacaaataaatcaaacatcaatgatcaaaagttgtgacaattaattgaatagtacttgcctgaagcgacagcaggatattgactgaatcatataa |
216 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
166046 |
agtagcacaaataaatcaaacatcaatgatcaaaagttgtgacaattaattgaatagtacttgcctgaagcgacagcaggatattgactgaatcatataa |
165947 |
T |
|
| Q |
217 |
cctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgtagacaacactggaacaacccataattttaccttaattaacttata |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
165946 |
cctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgtagacaacactggaacaacccataattttaccttaattaacttata |
165847 |
T |
|
| Q |
317 |
attcggcttgattgtgaaagcttagtatcaaattacattgtttatagcctatgttgttaattacc |
381 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
165846 |
attcggcttgattgtgaaagcttagtatcaaattacattgtttatagcctatgttgttaattacc |
165782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 159 - 287
Target Start/End: Complemental strand, 105363 - 105235
Alignment:
| Q |
159 |
caattaattgaatagtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaa |
258 |
Q |
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|
|||| |||| ||||| ||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
105363 |
caataaatttaatagcacttgcctgaagcgacaacaagacattgaccgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaa |
105264 |
T |
|
| Q |
259 |
cattgataaatgtagacaacactggaaca |
287 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |
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|
| T |
105263 |
cattgataaaagtagacaacactgaaaca |
105235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 105598 - 105466
Alignment:
| Q |
17 |
acttctaaccattttggagctcctgctggctcccaagctgccaatccaccatttttactctacactaattaaaaaataaagttgtgtcaaaattaaacca |
116 |
Q |
| |
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||||||||||| | | |||||||||| |||||||| |||||||| ||||| |||||||||| || | ||| |||||| |||||||| |||| || | || |
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| T |
105598 |
acttctaaccactcttgagctcctgcgggctcccatgctgccaaaccaccctttttactctgcaatcatt-aaaaatttagttgtgttaaaagtagatca |
105500 |
T |
|
| Q |
117 |
ggtagcacaaataaatcaaacatcaatgatcaaa |
150 |
Q |
| |
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||||||| ||||||||||||||| | |||||||| |
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|
| T |
105499 |
ggtagcataaataaatcaaacataagtgatcaaa |
105466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 171 - 281
Target Start/End: Original strand, 5720992 - 5721102
Alignment:
| Q |
171 |
tagtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatg |
270 |
Q |
| |
|
|||||||||||||||| || | || ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
5720992 |
tagtacttgcctgaagagaaaacaagatattgactgaatcatataacctttcaggttccattttttcccccacaatctctggaggcaacattgataaaag |
5721091 |
T |
|
| Q |
271 |
tagacaacact |
281 |
Q |
| |
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|||||||||| |
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| T |
5721092 |
cagacaacact |
5721102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 171 - 281
Target Start/End: Original strand, 5688260 - 5688370
Alignment:
| Q |
171 |
tagtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatg |
270 |
Q |
| |
|
|||||||||||||||| || | || ||||||||| ||||||||||||||||| |||||||| |||||||| |||||||| |||| ||||||||||||| | |
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| T |
5688260 |
tagtacttgcctgaagagaaaacatgatattgacggaatcatataacctttcaggttccattttttcccctacaatctccggagacaacattgataaaag |
5688359 |
T |
|
| Q |
271 |
tagacaacact |
281 |
Q |
| |
|
|||||||||| |
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|
| T |
5688360 |
cagacaacact |
5688370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 174 - 287
Target Start/End: Original strand, 5653926 - 5654039
Alignment:
| Q |
174 |
tacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgtag |
273 |
Q |
| |
|
||||| ||||||| |||| || | ||||||||||||||||| |||||| ||||| | | ||||||||||||||| ||||||||||||||| ||| |||| |
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| T |
5653926 |
tactttcctgaagtgacaacacaaaattgactgaatcatatagcctttcgggttcaaccatttcccccacaatctttggaggcaacattgacaaaagtag |
5654025 |
T |
|
| Q |
274 |
acaacactggaaca |
287 |
Q |
| |
|
||||||||| |||| |
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|
| T |
5654026 |
acaacactgaaaca |
5654039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 5668475 - 5668582
Alignment:
| Q |
173 |
gtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgta |
272 |
Q |
| |
|
|||||||||||||| || | ||||||||||| | ||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||| |||||| | | |
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| T |
5668475 |
gtacttgcctgaagagaaaataggatattgaccgcatcatataacctttcaggttccatctttt-ccccacaatctccggaggcagcatcgataaaagca |
5668573 |
T |
|
| Q |
273 |
gacaacact |
281 |
Q |
| |
|
||||||||| |
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|
| T |
5668574 |
gacaacact |
5668582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 173 - 287
Target Start/End: Original strand, 12136454 - 12136568
Alignment:
| Q |
173 |
gtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgta |
272 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| ||| |
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|
| T |
12136454 |
gtacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttcccctacaatctttggaggcaacactgataaaagta |
12136553 |
T |
|
| Q |
273 |
gacaacactggaaca |
287 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
12136554 |
ggcaacactgaaaca |
12136568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 12136291 - 12136351
Alignment:
| Q |
17 |
acttctaaccattttggagctcctgctggctcccaagctgccaatccaccatttttactct |
77 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||| || || ||||||||||||| |
|
|
| T |
12136291 |
acttctaaccattctggagctcctgctggctcccatgctgctaaaccgccatttttactct |
12136351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 13053861 - 13053749
Alignment:
| Q |
175 |
acttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgtaga |
274 |
Q |
| |
|
|||| ||||||| |||| ||| | ||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||| |
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|
| T |
13053861 |
acttacctgaagtgacaacagaagattgactgaatcatataacctctctggttccatattttcacccacaatctcaggaggcaacattgataaaagtaga |
13053762 |
T |
|
| Q |
275 |
caacactggaaca |
287 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
13053761 |
caacactgaaaca |
13053749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 164 - 287
Target Start/End: Original strand, 91396 - 91519
Alignment:
| Q |
164 |
aattgaatagtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattg |
263 |
Q |
| |
|
||||||| ||||| ||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||| |
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| T |
91396 |
aattgaacagtacatgcctgaagtgacaacaggagattgactgaatcatataacctttccggttccatcttttcccccacagttgctggaggaaacattg |
91495 |
T |
|
| Q |
264 |
ataaatgtagacaacactggaaca |
287 |
Q |
| |
|
|||| ||| ||||||||| |||| |
|
|
| T |
91496 |
ataatagtaaacaacactgaaaca |
91519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 91212 - 91269
Alignment:
| Q |
17 |
acttctaaccattttggagctcctgctggctcccaagctgccaatccaccatttttac |
74 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91212 |
acttctaaccattcttgacctcctgctggctcccaagctgccaatccaccatttttac |
91269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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