View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14805_low_13 (Length: 371)
Name: NF14805_low_13
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 85 - 356
Target Start/End: Original strand, 12896682 - 12896953
Alignment:
| Q |
85 |
aatgaaaggtagtaggttcatgttagaagtcaaatagaatgaggttgaattgtcatattcacatttcacaaatctttagaactattaaatcccttctagt |
184 |
Q |
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| T |
12896682 |
aatgaaaggtagtaggttcatgttagaagtcaaatagaatgaggttgaattgtcatattcacatttcacaaatctttagaactattaagtctcttctagt |
12896781 |
T |
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| Q |
185 |
atttctcaagctaagcatatccgaacaaggttgaatcacaataattcataagaataatgacatccatatagatataacaagatgatgtttgtgaatgtta |
284 |
Q |
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| T |
12896782 |
atttctcaagttaagcatatccgaacaaggttgaatcacaataattcataagaataatgacatccatatagatgtaacaagatgatgtttgtg-atgtta |
12896880 |
T |
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| Q |
285 |
tatcatgaaaacaagcatcatctga-ttttctcaccatttcgtcaaagacttcatggtttttgatgaacttct |
356 |
Q |
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| T |
12896881 |
tatcatgaaaacgagcatcatctgatttttctcaccatttcgtcaaagacttcatggtttttgatgaacttct |
12896953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 12896584 - 12896621
Alignment:
| Q |
12 |
atttagaaaaatcaagaagaaaaatgcaggcttgatat |
49 |
Q |
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| T |
12896584 |
atttagaaaaatcaagaagaaaaatgcaggcttcatat |
12896621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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