View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14805_low_15 (Length: 325)
Name: NF14805_low_15
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 43128611 - 43128911
Alignment:
| Q |
17 |
aaaagattcataagtatctaattatagctgtataagaatttatttgggtttggcacattcactatatgcatatataatactacgtagctagtatgcatca |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43128611 |
aaaagattcataagtatctaattatagctgtacaagaatttatttgggtttggcacattcactatatgcatatata---ctacgtagctagtatgcatca |
43128707 |
T |
|
| Q |
117 |
catcaaagtatatagatagattctttgcagcccctcacatcctcttcaacacaatcttagttgttgaactaatataactatcacgaagtaaattatacct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43128708 |
catcaaagtatatagatagattctttgcagcccctcatatcctcttcaacacaatcttagttgttgaactaatataactatcacgaagtaaattatacct |
43128807 |
T |
|
| Q |
217 |
agaagacatgtagacaacaaattgctctgttaggtcttttggatgaaagtttttactatgct-tagtgaaagtttaattgttttcactaaccaattttcc |
315 |
Q |
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|||||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||| |
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| T |
43128808 |
agaagacatgtagacaacaaattgtgcttttaggtctttttgatgaaagtttttacgatgttgtagtgaaagtttaattgttttcactaaccaattctcc |
43128907 |
T |
|
| Q |
316 |
tttg |
319 |
Q |
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|||| |
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| T |
43128908 |
tttg |
43128911 |
T |
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