View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14805_low_18 (Length: 292)
Name: NF14805_low_18
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 29002253 - 29002505
Alignment:
| Q |
19 |
ggtggttgtggttttggtagtggtgatgatgatcctgttgcttgggctcaaagggagttgaaaaagtctgaaactttcaatgatagagcttcattgaaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29002253 |
ggtggttgtggttttggtagtggtgatgatgatcctgttgcttgggctgaaagggagttgaaaaagtctgaaactttcaatgatagagcttcattgaaaa |
29002352 |
T |
|
| Q |
119 |
gagaaaaatcaatgagtcctgaagaattgaataaaagagctgaagcttttatcaagaagtttaataatcagatgaagttgcagaggcttgaatcttatca |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29002353 |
gagaaaaatcaatgagtcctgaggaattgaataaaagagctgaagcttttatcaagaagtttaataatcagatgaagttgcagaggcttgaatcttatca |
29002452 |
T |
|
| Q |
219 |
gcgttttatgaaattggttaaccctggtgcttgatgatgatctggttgatgtt |
271 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29002453 |
gcgttttctgaaattggttaaccctggtgcttgatgatgatctggttgatgtt |
29002505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 28 - 233
Target Start/End: Original strand, 28962533 - 28962738
Alignment:
| Q |
28 |
ggttttggtagtggtgatgatgatcctgttgcttgggctcaaagggagttgaaaaagtctgaaactttcaatgatagagcttcattgaagagagaaaaat |
127 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28962533 |
ggtttttgtggtggtgatgatgatcctgttgcttgggctcaaagggagttgaaaaagtctgaaacattcaatgatagagcttcattgaagagagaaaaat |
28962632 |
T |
|
| Q |
128 |
caatgagtcctgaagaattgaataaaagagctgaagcttttatcaagaagtttaataatcagatgaagttgcagaggcttgaatcttatcagcgttttat |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
28962633 |
caatgagtcctgaagaattgaataaaagagctgaagcttttatcaagaagtttaataatcaaatgaagttgcagaggatggaatcttatcatcgttttat |
28962732 |
T |
|
| Q |
228 |
gaaatt |
233 |
Q |
| |
|
|||||| |
|
|
| T |
28962733 |
gaaatt |
28962738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University