View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14805_low_22 (Length: 264)

Name: NF14805_low_22

Description: NF14805

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14805_low_22

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 214; E-Value: 1e-117

Query Start/End: Original strand, 12 - 264

Target Start/End: Original strand, 36808090 - 36808349

Alignment:

Q	12	gagagagaagaaagagagttcaatgtgattttaacttgttttatatccaaaaccatgttgtcttgaagaatagtcgtaaaatcaccgcctttgagttact	111	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36808090	gagagagaagaaagcgagttcaatgtgattttaacttgttttatatccaaaaccatgttgtcttgaagaatagtcgtaaaatcaccgcctttgagttaca	36808189	T

Q	112	actcaaaaattattgttaaggacaacaaattacattacagtacagaaaatcaaagattatatttatgcaggatggtgtcatccaagatcagcctaccaaa	211	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	36808190	actcaaaaattattgttaaggacaacaaattacattacagtacagaaaattaaagattatatttatgcaggatggtgtcatccaagatcagcctagcaaa	36808289	T

Q	212	ataggaattaggggagaaacg-------tcgggagaaacagagaatggaacagaacccgt	264	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36808290	ataggaattaggggagaaacggctgaatttgggagaaacagagaatggaacagaacccgt	36808349	T

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Target: chr3; HSP #2

Raw Score: 40; E-Value: 0.0000000000001

Query Start/End: Original strand, 12 - 51

Target Start/End: Complemental strand, 36526307 - 36526268

Alignment:

Q	12	gagagagaagaaagagagttcaatgtgattttaacttgtt	51	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36526307	gagagagaagaaagagagttcaatgtgattttaacttgtt	36526268	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]