View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14805_low_31 (Length: 207)
Name: NF14805_low_31
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 32 - 189
Target Start/End: Complemental strand, 17494903 - 17494746
Alignment:
| Q |
32 |
tctgcgtggataagtaacttatctacttcattgaaggnnnnnnncatttgaaacaaaataaataataaggtgcatgtgatatcgaattttagtagggtta |
131 |
Q |
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| T |
17494903 |
tctgcgtggataagtaacttatctacttcattgaaggaaaaaaacatttgaaacaaaataaataataaggtgcatgtgatatcgaattttagtagggtta |
17494804 |
T |
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| Q |
132 |
tagcacgaatcacgtgtaccacgtttaccttcccatgcttccaacatggttgcagatg |
189 |
Q |
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| T |
17494803 |
tagcacgaatcacgtgtaccacgcttaccttcccatgcttccaacatggttgcagatg |
17494746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 32 - 189
Target Start/End: Original strand, 17558311 - 17558468
Alignment:
| Q |
32 |
tctgcgtggataagtaacttatctacttcattgaaggnnnnnnncatttgaaacaaaataaataataaggtgcatgtgatatcgaattttagtagggtta |
131 |
Q |
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| T |
17558311 |
tctgcgtggataagtaacttatctacttcattgaaggaaaaaaacatttgaaacaaaataaataataaggtgcatgtgatatcgaattttagtagggtta |
17558410 |
T |
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| Q |
132 |
tagcacgaatcacgtgtaccacgtttaccttcccatgcttccaacatggttgcagatg |
189 |
Q |
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| T |
17558411 |
tagcacgaatcacgtgtaccacgcttaccttcccatgcttccaacatggttgcagatg |
17558468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 1922178 - 1922023
Alignment:
| Q |
34 |
tgcgtggataagtaacttatctacttcattgaaggnnnnnnncatttgaaacaaaataaataataaggtgcatgtgatatcgaattttagtagggttata |
133 |
Q |
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| T |
1922178 |
tgcgtggataagtaacttatctacttcattgaaggaaaaaaacatttgaaacaaaataaataataaggtacatgtgatatcgaattttagtagggttata |
1922079 |
T |
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| Q |
134 |
gcacgaatcacgtgtaccacgtttaccttcccatgcttccaacatggttgcagatg |
189 |
Q |
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| T |
1922078 |
gcacgaatcacgtgtaccacgtttaccttcccatgcttccaacatggttgcagatg |
1922023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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