View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14805_low_4 (Length: 574)
Name: NF14805_low_4
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 7 - 559
Target Start/End: Original strand, 2017059 - 2017611
Alignment:
| Q |
7 |
agtagcaaaggacactttctcgaacaaatgaccttgcggtattgaaatctgacaacaaccagtgccggagcaagattcattggccacgatatcattaaac |
106 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017059 |
agtaacaaaggacactttctcgaacaaatgaccttgcggtattgaaatctgacaacaaccagtgccggagcaagattcattggccacgatatcattaaac |
2017158 |
T |
|
| Q |
107 |
ctgttgcacaaagccaaacatcccgtcgtgtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaaaaaacttgt |
206 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2017159 |
ctgttgcacaaagccaaacatcccgtggtgtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaacaaacttgt |
2017258 |
T |
|
| Q |
207 |
ttcgtgttgatgagacgggaagatgtgtcattctgataccccaaaatgattggttcacctgtatgctcttttcgtcgtagcaatcgctggctactggcca |
306 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017259 |
ttcgtgttgatgagacgggaaaatgtgtcattctgataccccaaaatgattggttcacctgtatgctcttttcgtcgtagcaatcgctggctactggcca |
2017358 |
T |
|
| Q |
307 |
tgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatgtgttgaggttnnnnnnnnnnnnnnnnnt |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | |
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| T |
2017359 |
tgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtatatgggttgaggttgaagaagaagaagaagat |
2017458 |
T |
|
| Q |
407 |
gcttaggtgcaatttatgagaaaagtgttgtccaaggaacaatccttggtggttccaaatggaaagggaattgtggcagagccacactttgttgtgcagt |
506 |
Q |
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| T |
2017459 |
gctttggtgcaatttatgagaaaagtgttgtccaaggaacaatccttggtggttccaaatggaaagggaattgtgacagagccacactttgttgtgcagt |
2017558 |
T |
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| Q |
507 |
ttgggagagatagttgctgagttgttgcttttgcaaaaaagaccgcaaaaact |
559 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2017559 |
ttgggagagatagttgctgagttgttgcttttgcaaaaaagaccgcaaaaact |
2017611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 36 - 355
Target Start/End: Complemental strand, 40566586 - 40566267
Alignment:
| Q |
36 |
gaccttgcggtattgaaatctgacaacaaccagtgccggagcaagattcattggccacgatatcattaaacctgttgcacaaagccaaacatcccgtcgt |
135 |
Q |
| |
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||||||| ||||||||||||| ||||||||||| || |||||||||| | |||||| ||||||| || ||||||||| ||||||| |||||| || || |
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| T |
40566586 |
gaccttggggtattgaaatctcgcaacaaccagtacctgagcaagattgactggccataatatcatcaagcctgttgcataaagccacacatcctgtggt |
40566487 |
T |
|
| Q |
136 |
gtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaaaaaacttgtttcgtgttgatgagacgggaagatgtgtc |
235 |
Q |
| |
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|||||||||||||||| |||||| || | |||| | ||||||||||||||||||| || ||||||||||| |||| |||| | || ||||||| |
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| T |
40566486 |
gtagttgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaactgctgtcaacttgtttcgagttggcgagatgtaaaaatgtgtc |
40566387 |
T |
|
| Q |
236 |
attctgataccccaaaatgattggttcacctgtatgctcttttcgtcgtagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgaga |
335 |
Q |
| |
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|| | ||| ||| | | ||||| | | ||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||| || |||| |
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| T |
40566386 |
atgttcatatcccgcagcgtttggtatatgaatctgcccttttctgcgtagcaatcgctggctactggccatgcaacgtgcaattcaccattgagtgaga |
40566287 |
T |
|
| Q |
336 |
tgtttaggacagtttgatta |
355 |
Q |
| |
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| ||||||||| |||||||| |
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|
| T |
40566286 |
tatttaggacattttgatta |
40566267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 284 - 510
Target Start/End: Complemental strand, 40577448 - 40577234
Alignment:
| Q |
284 |
tagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatgtgttg |
383 |
Q |
| |
|
||||||| ||||||||||||||||||||| | |||||||||| ||| ||||||||||| ||| |||||||||| ||||||| ||| |||| | ||||| |
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|
| T |
40577448 |
tagcaatagctggctactggccatgcaacgtgaagttcaccattaagtgagatgtttagaacactttgattagtctgtggcaagaatggtacctctgttg |
40577349 |
T |
|
| Q |
384 |
aggttnnnnnnnnnnnnnnnnntgcttaggtgcaatttatgagaaaagtgttgtccaaggaacaatccttggtggttccaaatggaaagggaattgtggc |
483 |
Q |
| |
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||||| || || | |||||| |||||||| |||||||| | |||||||||||||||||||||||||| |||||||| ||| | |
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| T |
40577348 |
aggtt------------gaagatgttttgttgcaatcgatgagaaaggtgttgtctagagaacaatccttggtggttccaaatgggaagggaatagtgac |
40577261 |
T |
|
| Q |
484 |
agagccacactttgttgtgcagtttgg |
510 |
Q |
| |
|
| |||||||||||||| |||||||| |
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| T |
40577260 |
attgccacactttgttggacagtttgg |
40577234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 233
Target Start/End: Complemental strand, 40595958 - 40595769
Alignment:
| Q |
44 |
ggtattgaaatctgacaacaaccagtgccggagcaagattcattggccacgatatcattaaacctgttgcacaaagccaaacatcccgtcgtgtagttgt |
143 |
Q |
| |
|
||||||||||||| ||||||||| | |||||| ||||||||||||||||| |||||| ||| |||||||||||| |||| |||| | || ||||| ||| |
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| T |
40595958 |
ggtattgaaatctcacaacaacctgggccggaacaagattcattggccacaatatcactaagcctgttgcacaaggccacacatgcagtggtgtatgtgt |
40595859 |
T |
|
| Q |
144 |
ttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaaaaaacttgtttcgtgttgatgagacgggaagatgtg |
233 |
Q |
| |
|
|||| | |||||| |||| |||||| | | || |||||||| ||||| || | ||||||||| | |||| |||||| ||| ||||| |
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|
| T |
40595858 |
ttcctttagaatcaattgcttcgagtagtcccattgtgtcacatccaactgctatcaacttgttttgagttggcgagacgtgaaaatgtg |
40595769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 284 - 388
Target Start/End: Complemental strand, 40571025 - 40570921
Alignment:
| Q |
284 |
tagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatgtgttg |
383 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||||| || || ||||||||||| ||| |||||||||| ||||||| ||| |||| | ||||| |
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| T |
40571025 |
tagcaatcacttgctactggccatgcagcacgcagttcaccgtcgagtgagatgtttagaacactttgattagtctgtggcaagaatggtacgtctgttg |
40570926 |
T |
|
| Q |
384 |
aggtt |
388 |
Q |
| |
|
||||| |
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|
| T |
40570925 |
aggtt |
40570921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 510
Target Start/End: Complemental strand, 40566214 - 40566118
Alignment:
| Q |
414 |
tgcaatttatgagaaaagtgttgtccaaggaacaatccttggtggttccaaatggaaagggaattgtggcagagccacactttgttgtgcagtttgg |
510 |
Q |
| |
|
||||||| |||||||| || ||||| | |||||||| ||| ||||||||||||||||||||||| ||| | || ||||| ||||||| ||| ||||| |
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|
| T |
40566214 |
tgcaattaatgagaaaggtattgtcgagggaacaattcttagtggttccaaatggaaagggaatggtgacggaaccacattttgttgggcaatttgg |
40566118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 500
Target Start/End: Complemental strand, 40570899 - 40570821
Alignment:
| Q |
422 |
atgagaaaagtgttgtccaaggaacaatccttggtggttccaaatggaaagggaattgtggcagagccacactttgttg |
500 |
Q |
| |
|
|||||||| |||||||| | ||||||| ||||||||||||||||| |||||||| ||| || |||||||||||||| |
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|
| T |
40570899 |
atgagaaaggtgttgtctagagaacaattattggtggttccaaatgggaagggaatagtgacattgccacactttgttg |
40570821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 210
Target Start/End: Complemental strand, 40589562 - 40589388
Alignment:
| Q |
36 |
gaccttgcggtattgaaatctgacaacaaccagtgccggagcaagattcattggccacgatatcattaaacctgttgcacaaagccaaacatcccgtcgt |
135 |
Q |
| |
|
||||||| |||| |||||||| |||||||||| || || ||||| |||||||| |||| |||| |||||||||| ||||||||||||| | || |
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|
| T |
40589562 |
gaccttggggtaccgaaatctggcaacaaccaggaccagaacaagactcattggcaacgagatcagcgtgcctgttgcaccaagccaaacatccagaggt |
40589463 |
T |
|
| Q |
136 |
gtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaaaaaacttgtttcg |
210 |
Q |
| |
|
|||||||||||| || |||||| | || |||||||| || || ||||||||||| || | ||||||||||| |
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|
| T |
40589462 |
gtagttgtttccttcagaatcaattactccgagtattccagatgtatcacagccaactgctaccaacttgtttcg |
40589388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 40595727 - 40595654
Alignment:
| Q |
284 |
tagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagt |
357 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||| ||| || || |||| |||| ||||||||| |
|
|
| T |
40595727 |
tagcaatgtctggctactggccatgcaacatgcagttcaccattaagtgatatatttaagacacgttgattagt |
40595654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 40600359 - 40600307
Alignment:
| Q |
293 |
ctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggac |
345 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| || ||||| |||||||| |
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|
| T |
40600359 |
ctggctactggccatgcgacacgcaattcaccattgagtgagatatttaggac |
40600307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 179 - 388
Target Start/End: Complemental strand, 8490797 - 8490588
Alignment:
| Q |
179 |
gtgtcacagccaacggcaaaaaacttgtttcgtgttgatgagacgggaagatgtgtcattctgataccccaaaatgattggttcacctgtatgctctttt |
278 |
Q |
| |
|
|||||||| ||||| || | |||||||||| |||| ||||| ||||||||||||| |||| || | ||| |||||||||| || | | ||||| |
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|
| T |
8490797 |
gtgtcacaaccaactgctatcaacttgtttccggttggtgagatttgaagatgtgtcatgttgatgccaggatatgtttggttcaccagtttaccctttt |
8490698 |
T |
|
| Q |
279 |
cgtcgtagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatg |
378 |
Q |
| |
|
| | |||||||| ||| ||| ||||||||||||| ||||||||||||| || ||||||||||| ||| |||||||| | ||||||| ||| |||| | |
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|
| T |
8490697 |
cagcatagcaatcactgcctattggccatgcaacatgcagttcaccatcgagtgagatgtttagaacactttgattactctgtggcaagaatggtacgtc |
8490598 |
T |
|
| Q |
379 |
tgttgaggtt |
388 |
Q |
| |
|
|||||||||| |
|
|
| T |
8490597 |
tgttgaggtt |
8490588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 422 - 510
Target Start/End: Complemental strand, 8490566 - 8490478
Alignment:
| Q |
422 |
atgagaaaagtgttgtccaaggaacaatccttggtggttccaaatggaaagggaattgtggcagagccacactttgttgtgcagtttgg |
510 |
Q |
| |
|
|||||||| |||||||| | |||||| |||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||| |
|
|
| T |
8490566 |
atgagaaaggtgttgtctagagaacaactcttggtggttccaaatgggaagggaatagtgacagagccacactttgttggacagtttgg |
8490478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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