View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14805_low_5 (Length: 532)
Name: NF14805_low_5
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14805_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 16 - 521
Target Start/End: Complemental strand, 33900759 - 33900254
Alignment:
| Q |
16 |
cataacctttgctcaaagctttataggctccaacataaaatcttcttcctatgacaaactgtaccggtgtcgaaaactcccaccgtatgagcaatccaat |
115 |
Q |
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| T |
33900759 |
cataacctttgctcaaagctttataggctccaacataaaatcttcttcctatgacaaactgtaccggtgtcgaaaactcccaccgtatgagcaatccaat |
33900660 |
T |
|
| Q |
116 |
attcaacatattgacaattttgacctctaaaacatctttaactccaggtatatacataagaaccatagatgttnnnnnnncaggaacagtaaaaaccaaa |
215 |
Q |
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| T |
33900659 |
attcaacatattgacaattttgacctctaaaacatttttaactccaggtatatacataagaaccatagatgttaaaaaaacaggaacagtaaaaaccaaa |
33900560 |
T |
|
| Q |
216 |
ctccaaattaataatttaaagtatctattaatttcctcttgtttatgtgcttttcttccaccatcatttggaaatattgtggctctaaaacaccctgatc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33900559 |
ctccaaattaataatttaaagtatctattaatttcctcttgtttatgtgcttttcttccaccatcatttggaaatattgtggctctaaaacaccctgatc |
33900460 |
T |
|
| Q |
316 |
ctgaagattcaatgagttcaatgaaagttcttggaccagtcatataaggtttataagttaagacaattttattaatgtctaaatatgtttctatggtttc |
415 |
Q |
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| T |
33900459 |
ctgaagattcaatgagttcaatgaaagttcttggaccagtcatataaggtttataagttaagacaattttattaatgtctaaatatgtttctatggtttc |
33900360 |
T |
|
| Q |
416 |
aacaccttgaagtgtcctaagagattgttcaatgatatacattgattgttcattttttatgccatcaattttaagttcaattttgcttatgtgttcccct |
515 |
Q |
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| T |
33900359 |
aacaccttgaagtgtcctaagagattgttcaatgatatacattgattgttcattttttatgccatcaattttaagttcaattttgcttatgtgttcccct |
33900260 |
T |
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| Q |
516 |
ttgctt |
521 |
Q |
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|||||| |
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| T |
33900259 |
ttgctt |
33900254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 391
Target Start/End: Original strand, 42516197 - 42516318
Alignment:
| Q |
270 |
cttccaccatcatttggaaatattgtggctctaaaacaccctgatcctgaagattcaatgagttcaatgaaagttcttggaccagtcatataaggtttat |
369 |
Q |
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||||||| |||||| ||||||| ||||||||||||| |||||| || ||| ||||| | |||||||| ||| |||| ||||| ||||| ||||||| |
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| T |
42516197 |
cttccacagtcatttagaaatatcatggctctaaaacaacctgatactttagactcaattacatcaatgaaggtttttggtccagttatatatggtttat |
42516296 |
T |
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| Q |
370 |
aagttaagacaattttattaat |
391 |
Q |
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|| ||||||||||||| ||||| |
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| T |
42516297 |
aaattaagacaatttttttaat |
42516318 |
T |
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