View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14805_low_9 (Length: 436)

Name: NF14805_low_9
Description: NF14805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14805_low_9
NF14805_low_9
[»] chr7 (16 HSPs)
chr7 (1-418)||(7327731-7328148)
chr7 (4-277)||(7311481-7311754)
chr7 (293-418)||(7311310-7311435)
chr7 (3-61)||(7306602-7306660)
chr7 (28-173)||(20456085-20456230)
chr7 (35-84)||(21210846-21210895)
chr7 (28-80)||(20414456-20414508)
chr7 (41-91)||(22525580-22525630)
chr7 (45-91)||(22534240-22534286)
chr7 (130-179)||(20414570-20414619)
chr7 (308-364)||(20456359-20456415)
chr7 (126-173)||(21210756-21210803)
chr7 (145-178)||(22525511-22525544)
chr7 (304-357)||(36260106-36260159)
chr7 (143-175)||(21221220-21221252)
chr7 (138-170)||(22534315-22534347)
[»] scaffold0064 (1 HSPs)
scaffold0064 (36-84)||(23807-23855)
[»] chr4 (2 HSPs)
chr4 (45-92)||(2910627-2910674)
chr4 (41-85)||(11982095-11982139)
[»] chr6 (1 HSPs)
chr6 (136-164)||(6954876-6954904)


Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 7327731 - 7328148
Alignment:
Q  1 gttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatgataattcaaccaacacttataaggttgtagccttgcattataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7327731 gttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatgataattcaaccaacacttataaggttgtagccttgcattataa 7327830  T
Q  101 tagcaattttagcaaccctaaggttgaggtgagcatttttactttgggtgataatgtttggagaactattcaaactttagctgttttgcctcttcagata 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7327831 tagcaattttagcaatcctaaggttgaggtgagcatttttactttgggtgataatgtttggaaaactattcaaactttagctgttttgcctcttcagata 7327930  T
Q  201 gactttgcttattggagagtttacgagggtgtacaatttaattgcactgttaactggttggcacgcaatcggattcctaccaatactgctagtattatta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7327931 gactttgcttattggagagtttacgagggtgtacaatttaattgcactgttaactggttggcacgcaatcggattcctaccaatactgctagtattatta 7328030  T
Q  301 atgaatttgtgattgtttcactacatctagggaccgagacatacacaaagttgatgctccctcctggtgctgaggagtcgacacattcatcaaatgtttg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328031 atgaatttgtgattgtttcactacatctagggaccgagacatacacaaagttgatgctccctcctggtgctgaggagtcgacacattcatcaaatgtttg 7328130  T
Q  401 tgtgttgatgaactcctt 418  Q
    ||||||||||||||||||    
T  7328131 tgtgttgatgaactcctt 7328148  T

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Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 4 - 277
Target Start/End: Complemental strand, 7311754 - 7311481
Alignment:
Q  4 gtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatgataattcaaccaacacttataaggttgtagccttgcattataatag 103  Q
    |||||||||||||| |||||| || ||||||||||||||| |||||||||||||||||||||||  ||  |||||||||||| ||||||||||||||| |    
T  7311754 gtttcgatgatttcgattatggatcgaattcttggaggttcgtgttttgttatgataattcaacggactattataaggttgtggccttgcattataatgg 7311655  T
Q  104 caattttagcaaccctaaggttgaggtgagcatttttactttgggtgataatgtttggagaactattcaaactttagctgttttgcctcttcagatagac 203  Q
     ||| | | || |||   |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| || || ||||||||||| |   |    
T  7311654 aaatgtcaacagccccgtggttgaggtgagcattttcactttgggtgataatgtttggagaactatacaaactttatcttttgtgcctcttcagcttctc 7311555  T
Q  204 tttgcttattggagagtttacgagggtgtacaatttaattgcactgttaactggttggcacgcaatcggattcc 277  Q
    | |   ||||||||| | || || ||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  7311554 tatagctattggagaatgtatgatggtgtacaattcaactgcacggttaactggttggcacgcaatcggattcc 7311481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 293 - 418
Target Start/End: Complemental strand, 7311435 - 7311310
Alignment:
Q  293 tattattaatgaatttgtgattgtttcactacatctagggaccgagacatacacaaagttgatgctccctcctggtgctgaggagtcgacacattcatca 392  Q
    ||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||  |||||||  |||||||||||| ||||    
T  7311435 tattatttatgaatttgtgattatttcactacatatagggactgagacatacacaaagttgatgctccctccaagtgctgacaagtcgacacatttatca 7311336  T
Q  393 aatgtttgtgtgttgatgaactcctt 418  Q
    | ||||||||||||||||||||||||    
T  7311335 agtgtttgtgtgttgatgaactcctt 7311310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 7306660 - 7306602
Alignment:
Q  3 tgtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatgataa 61  Q
    ||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  7306660 tgtttcgatgatttcaattataaatcgaattcttggaggttcgtgttttgttatgataa 7306602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 20456085 - 20456230
Alignment:
Q  28 ggaattcttggaggtttgtgttttgttatgataattcaaccaacacttataaggttgtagccttgcattataatagcaatttt-agcaaccctaaggttg 126  Q
    |||| ||||||| |||||||||||||| ||||||||||||| |||| ||||||||||| |||||| ||| | | ||   |||| |  || ||| |||||     
T  20456085 ggaactcttggatgtttgtgttttgttttgataattcaaccgacacatataaggttgtggccttgaattgtga-agatgttttcaaaaaacctgaggtta 20456183  T
Q  127 aggtgagcatttttactttgggtgataatgtttggagaactattcaa 173  Q
    |  |||||||||||| ||||||||||||||||||||||| |||||||    
T  20456184 aaatgagcatttttagtttgggtgataatgtttggagaagtattcaa 20456230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 21210895 - 21210846
Alignment:
Q  35 ttggaggtttgtgttttgttatgataattcaaccaacacttataaggttg 84  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||||||    
T  21210895 ttggaagtttgtgttttgttatgataatttaaccgacacttataaggttg 21210846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 20414456 - 20414508
Alignment:
Q  28 ggaattcttggaggtttgtgttttgttatgataattcaaccaacacttataag 80  Q
    |||| ||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  20414456 ggaactcttggatgtttgtgtttggttatgatgattcaaccaacacttataag 20414508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 22525630 - 22525580
Alignment:
Q  41 gtttgtgttttgttatgataattcaaccaacacttataaggttgtagcctt 91  Q
    |||||||||| ||||||||||||||||| |||| ||||| |||||||||||    
T  22525630 gtttgtgtttggttatgataattcaaccgacacctataaagttgtagcctt 22525580  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 22534240 - 22534286
Alignment:
Q  45 gtgttttgttatgataattcaaccaacacttataaggttgtagcctt 91  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||    
T  22534240 gtgtttggttatgataattcaaccgacacctataaggttgtagcctt 22534286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 20414570 - 20414619
Alignment:
Q  130 tgagcatttttactttgggtgataatgtttggagaactattcaaacttta 179  Q
    |||||||||||| ||||||||||||||||||||||| |||| ||| ||||    
T  20414570 tgagcatttttagtttgggtgataatgtttggagaagtattaaaagttta 20414619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 20456359 - 20456415
Alignment:
Q  308 tgtgattgtttcactacatctagggaccgagacatacacaaagttgatgctccctcc 364  Q
    |||||||||||| ||  ||||||| || |||||||||||||||||||||| ||||||    
T  20456359 tgtgattgtttcccttgatctaggtactgagacatacacaaagttgatgccccctcc 20456415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 21210803 - 21210756
Alignment:
Q  126 gaggtgagcatttttactttgggtgataatgtttggagaactattcaa 173  Q
    |||||||||||||||| ||| ||||||||| |||||| ||||||||||    
T  21210803 gaggtgagcatttttagtttaggtgataatatttggaaaactattcaa 21210756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 22525544 - 22525511
Alignment:
Q  145 tgggtgataatgtttggagaactattcaaacttt 178  Q
    |||||||||||||||||||||||||| |||||||    
T  22525544 tgggtgataatgtttggagaactattaaaacttt 22525511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 36260106 - 36260159
Alignment:
Q  304 aatttgtgattgtttcactacatctagggaccgagacatacacaaagttgatgc 357  Q
    |||||||||||||||||||  |||| |  || ||||||||||||||||||||||    
T  36260106 aatttgtgattgtttcacttgatctggaaacagagacatacacaaagttgatgc 36260159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 21221252 - 21221220
Alignment:
Q  143 tttgggtgataatgtttggagaactattcaaac 175  Q
    |||| ||||||||||||||||||||||||||||    
T  21221252 tttgagtgataatgtttggagaactattcaaac 21221220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 22534315 - 22534347
Alignment:
Q  138 tttactttgggtgataatgtttggagaactatt 170  Q
    ||||| |||||||||||||||||||||||||||    
T  22534315 tttaccttgggtgataatgtttggagaactatt 22534347  T

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Target: scaffold0064 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 23807 - 23855
Alignment:
Q  36 tggaggtttgtgttttgttatgataattcaaccaacacttataaggttg 84  Q
    |||| |||||||||| ||||||| |||| ||||||||||||||||||||    
T  23807 tggaagtttgtgtttggttatgagaatttaaccaacacttataaggttg 23855  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 2910627 - 2910674
Alignment:
Q  45 gtgttttgttatgataattcaaccaacacttataaggttgtagccttg 92  Q
    |||||| ||||||||||||||||  |||||||||||||||| ||||||    
T  2910627 gtgtttggttatgataattcaactcacacttataaggttgtggccttg 2910674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 11982139 - 11982095
Alignment:
Q  41 gtttgtgttttgttatgataattcaaccaacacttataaggttgt 85  Q
    |||||||||| |||||| |||||||| | ||||||||||||||||    
T  11982139 gtttgtgtttggttatgttaattcaagcgacacttataaggttgt 11982095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 164
Target Start/End: Complemental strand, 6954904 - 6954876
Alignment:
Q  136 tttttactttgggtgataatgtttggaga 164  Q
    |||||||||||||||||||||||||||||    
T  6954904 tttttactttgggtgataatgtttggaga 6954876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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