View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14806_high_1 (Length: 593)
Name: NF14806_high_1
Description: NF14806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14806_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 566; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Original strand, 38486231 - 38486804
Alignment:
| Q |
1 |
gagaaggactattattctgttcttgttaagtatgaccaacagctggagagggaggtggaaatataccgtgtaaaattgccaggtcccttgaaacttggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486231 |
gagaaggactattattctgttcttgttaagtatgaccaacagctggagagggaggtggaaatataccgtgtaaaattgccaggtcccttgaaacttggag |
38486330 |
T |
|
| Q |
101 |
aaggaaagccggaaaatcaaaaccacgccatcatattcactcgcggggatgcaattcaaactattgatatgaaccaggacaactactttgaggaggcact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486331 |
aaggaaagccggaaaatcaaaaccacgccatcatattcactcgcggggatgcaattcaaactattgatatgaaccaggacaactactttgaggaggcact |
38486430 |
T |
|
| Q |
201 |
taaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggagtgagggaacatatatttacaggtttcgtttcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486431 |
taaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggagtgagggaacatatatttacaggtttcgtttct |
38486530 |
T |
|
| Q |
301 |
tctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaaccctttgaaaattcgaatgcattatggccatc |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486531 |
tctcttgcttggtttatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaaccctttgaaaattcgaatgcattatggccatc |
38486630 |
T |
|
| Q |
401 |
ctgatgtgtttgacaggttttggtttataactagaggtggtatcagtaaagcttctagagtgatcaacataagcgaggacatttttgccggttttaactg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486631 |
ctgatgtgtttgacaggttttggtttataactagaggtggtatcagtaaagcttctagagtgatcaacataagcgaggacatttttgccggttttaactg |
38486730 |
T |
|
| Q |
501 |
tactattcgtggaggtaatatcacacatcatgaatacattcaagttggaaaaggaagggatgttgggttgaatc |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486731 |
tactattcgtggaggtaatatcacacatcatgaatacattcaagttggaaaaggaagggatgttgggttgaatc |
38486804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 75 - 574
Target Start/End: Original strand, 3685536 - 3686035
Alignment:
| Q |
75 |
attgccaggtcccttgaaacttggagaaggaaagccggaaaatcaaaaccacgccatcatattcactcgcggggatgcaattcaaactattgatatgaac |
174 |
Q |
| |
|
|||||| ||||| || |||||||||||||| || ||||||||||| || || || || || || || || || ||||||||||| || || |||||||| |
|
|
| T |
3685536 |
attgcctggtcctttaaaacttggagaagggaaaccggaaaatcagaatcatgcaatgatctttacgcggggtgatgcaattcagaccatagatatgaat |
3685635 |
T |
|
| Q |
175 |
caggacaactactttgaggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggagtgaggg |
274 |
Q |
| |
|
|| ||||| || |||||||| || || ||| | || ||||| ||||| || ||||| ||| ||||||| || ||||| |||||||| || | | |
|
|
| T |
3685636 |
caagacaattattttgaggaagctctcaaaatgcggaatctgttggaggagttcaatgtctaccatggtatcaagaagccaaccattttgggggttcgtg |
3685735 |
T |
|
| Q |
275 |
aacatatatttacaggtttcgtttcctctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaacccttt |
374 |
Q |
| |
|
| ||||||| ||||| | ||||| || |||||||||||||||||| | || || |||||||||| || | || ||| | || ||||||||||||| |
|
|
| T |
3685736 |
agaatatattcacaggctctgtttcgtcgcttgcttggttcatgtcatcccaagagacaagttttgtgacactgggccagcgatttctggcaaacccttt |
3685835 |
T |
|
| Q |
375 |
gaaaattcgaatgcattatggccatcctgatgtgtttgacaggttttggtttataactagaggtggtatcagtaaagcttctagagtgatcaacataagc |
474 |
Q |
| |
|
|||| | || ||||| || || ||||| |||||||||||||| |||||||| | ||| ||||| |||| || || |||||||||||||| || || |
|
|
| T |
3685836 |
gaaagtacggatgcactacggtcatccggatgtgtttgacagattttggttcttgtgtaggggtggagtcagcaaggcatctagagtgatcaatattagt |
3685935 |
T |
|
| Q |
475 |
gaggacatttttgccggttttaactgtactattcgtggaggtaatatcacacatcatgaatacattcaagttggaaaaggaagggatgttgggttgaatc |
574 |
Q |
| |
|
|| || |||||||| ||||| || ||||| | || || || ||| | |||||||||||||| || || || || |||||||| |||||||| ||||||| |
|
|
| T |
3685936 |
gaagatatttttgctggtttcaattgtacattgcgaggtggcaatgtgacacatcatgaatatatacaggtaggtaaaggaagagatgttggcttgaatc |
3686035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 30295375 - 30295459
Alignment:
| Q |
94 |
cttggagaaggaaagccggaaaatcaaaaccacgccatcatattcactcgcggggatgcaattcaaactattgatatgaaccagg |
178 |
Q |
| |
|
||||||||||| ||||| |||||||||||| | || || |||| |||||| || || || | ||||| |||||||||||||||| |
|
|
| T |
30295375 |
cttggagaagggaagcctgaaaatcaaaacaatgcaataatatacactcgtggcgaagccctccaaacaattgatatgaaccagg |
30295459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 566
Target Start/End: Original strand, 30120632 - 30121195
Alignment:
| Q |
3 |
gaaggactattattctgttcttgttaagtatgaccaacagctggagagggaggtggaaatataccgtgtaaaattgccaggtcccttgaaacttggagaa |
102 |
Q |
| |
|
|||||| |||| ||||| |||||||||||||| || ||| |||| | |||||| ||| ||||| | || ||| |||| ||||| ||||| || || || |
|
|
| T |
30120632 |
gaaggagtatttctctgtccttgttaagtatgatcagcagttggaaaaggaggttgaagtatacagagtcaaactgccgggtccattgaagctcggggag |
30120731 |
T |
|
| Q |
103 |
ggaaagccggaaaatcaaaaccacgccatcatattcactcgcggggatgcaattcaaactattgatatgaaccaggacaactactttgaggaggcactta |
202 |
Q |
| |
|
|||||||| || |||||||| ||||||||||| |||||||||||||| || | || ||||| || ||||| ||||| |||||||||||||| ||||| | |
|
|
| T |
30120732 |
ggaaagcccgagaatcaaaatcacgccatcatcttcactcgcggggacgctttgcagactatagacatgaatcaggataactactttgaggaagcactca |
30120831 |
T |
|
| Q |
203 |
aagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggagtgagggaacatatatttacaggtttcgtttcctc |
302 |
Q |
| |
|
| | |||||||| | ||||| | | | |||||| ||| | || |||||||| ||||| || || |||||||| || || || || | ||| ||||| |
|
|
| T |
30120832 |
agatgagaaatctccttgaagagtatagacgttactacggtgtccggaaaccaacaattttaggtgtcagggaacacattttcactggctccgtgtcctc |
30120931 |
T |
|
| Q |
303 |
tcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaaccctttgaaaattcgaatgcattatggccatcct |
402 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||| |||||| |||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
30120932 |
tcttgcctggttcatgtcagcccaggagacaagtttcgtcaccctaggacagagggttttggcaaatcctttgaaagttcgaatgcattatggtcatcca |
30121031 |
T |
|
| Q |
403 |
gatgtgtttgacaggttttggtttataactagaggtggtatcagtaaagcttctagagtgatcaacataagcgaggacatttttgccggttttaactgta |
502 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| || || || |||| |
|
|
| T |
30121032 |
gatgtgtttgacaggttttggttcttaactcgaggtggtatcagcaaagcttccagagtgatcaacataagcgaggacatatttgctgggttcaattgta |
30121131 |
T |
|
| Q |
503 |
ctattcgtggaggtaatatcacacatcatgaatacattcaagttggaaaaggaagggatgttgg |
566 |
Q |
| |
|
|| |||||||||||||| |||| || |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
30121132 |
ctcttcgtggaggtaatgtcactcaccatgaatacattcaggttggaaagggaagggatgttgg |
30121195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 34191617 - 34191701
Alignment:
| Q |
94 |
cttggagaaggaaagccggaaaatcaaaaccacgccatcatattcactcgcggggatgcaattcaaactattgatatgaaccagg |
178 |
Q |
| |
|
||||| ||||||||||| || || ||||| || || || |||||||| || || |||||| ||||||||||||||||||| |||| |
|
|
| T |
34191617 |
cttggtgaaggaaagcctgagaaccaaaatcatgcgataatattcacccgtggtgatgcacttcaaactattgatatgaatcagg |
34191701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 574
Target Start/End: Complemental strand, 43955900 - 43955843
Alignment:
| Q |
517 |
aatatcacacatcatgaatacattcaagttggaaaaggaagggatgttgggttgaatc |
574 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||| || || ||||||||| |||||| |
|
|
| T |
43955900 |
aatattactcatcatgaatacatccaagttggaaagggtagagatgttgggatgaatc |
43955843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University