View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14806_high_15 (Length: 227)
Name: NF14806_high_15
Description: NF14806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14806_high_15 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 21284190 - 21284410
Alignment:
| Q |
7 |
gtttggttccatagttgagaggaattgattttgtttattcccattaaacttaatcatagtgaaaacctatgtgtttggtcttcctcagacaaaccttagt |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21284190 |
gtttggttccatagttgagaagaattgattttgtttattcccattaaacttaatcatagtgaaaacctatgtgtttggtcttcctcagacaaaccttagt |
21284289 |
T |
|
| Q |
107 |
ttgactagatgctgtaatgtgataatgaataacttttggcttcatttgaaaaatctacactaatttacattctaagttaaaagagtaaaaatcatcaaga |
206 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21284290 |
ttgactagatgttgtaatgtgataatgaataacttttggcttcatttgaaaaatctacactaatttacattctaagttaaaagagtaaaaatcatcaaaa |
21284389 |
T |
|
| Q |
207 |
gtcactttacctcaaattctt |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21284390 |
gtcactttacctcaaattctt |
21284410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 30598603 - 30598559
Alignment:
| Q |
28 |
gaattgattttgtttattcccattaaacttaatcatagtgaaaac |
72 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
30598603 |
gaattgattttggttgttcccattaaacttaattatagtgaaaac |
30598559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University