View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14806_high_2 (Length: 499)
Name: NF14806_high_2
Description: NF14806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14806_high_2 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 26953569 - 26953082
Alignment:
| Q |
1 |
tttaatctcctcttagatggttgaatcaaattattcatgttaccaaatatttgattaatcagtcttttatctagattccccaccaaagcaatgtgtgttt |
100 |
Q |
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| T |
26953569 |
tttaatctcctcttagatggttgaatcaaattattcatgttaccaaatagttgattaatcagtcttttatctagatttcccaccaaagcaatgtgtgttt |
26953470 |
T |
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| Q |
101 |
gatgaatgtgttcttagtgccatacc-taaaatgctgcatgtagataaaacacagaatacctgtcatcaatgacatttttgttaccaagcacaatatgtg |
199 |
Q |
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| T |
26953469 |
gatgaatgtgttcttagtgccataccctaaaatgctgcatgtagataaaacacagaatacct-------------tttttgctatcaagcacaatatgcg |
26953383 |
T |
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| Q |
200 |
tttattaccgtctgaatgtttatagcttaaccttcaatatctctgtaatttaactgaacagtattgactgatactactatgctttatttgatttagctaa |
299 |
Q |
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| T |
26953382 |
tttattaccgtctgaatgtttatagcttaaccttcaatatctctgtaatttaactgaacagtattgactgatactactatgctttatttgatttagctaa |
26953283 |
T |
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| Q |
300 |
ccttttctgcctgtttgactatatctaccatatcaaagaagtaaagttttcttttcagtattactgttttctatcaatggatatgtgcagtgcacgcagc |
399 |
Q |
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| T |
26953282 |
ccttttctgcctgtttgactatatctaccatatcaaagaagtaaagttttcttttcggtattactgttttctatcgatggatatgtgcagtgcacgcagc |
26953183 |
T |
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| Q |
400 |
acttaaa-aagttaagtaaatatgttttgtataggatagagaggatgtgcagcatcacttgtctatcctgctttttattgggttggcatgtggcttgatg |
498 |
Q |
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| T |
26953182 |
acttaaagaagttaagtaaatatgttttgtataggatagagaggatgtgcagcatcacttgtctatcctgctttttattgggttggcatgtggcttgatg |
26953083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 495
Target Start/End: Complemental strand, 27004966 - 27004895
Alignment:
| Q |
424 |
tttgtataggatagagaggatgtgcagcatcacttgtctatcctgctttttattgggttggcatgtggcttg |
495 |
Q |
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| T |
27004966 |
tttgtgtaggatagggaggaagtgcagcatcacatatctgtcttgctttttattgggttagcatgtggcttg |
27004895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 499
Target Start/End: Complemental strand, 26945436 - 26945361
Alignment:
| Q |
424 |
tttgtataggatagagaggatgtgcagcatcacttgtctatcctgctttttattgggttggcatgtggcttgatga |
499 |
Q |
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| T |
26945436 |
tttgtgtaggatacagaagaagtgcagcatcacatatctgtcttgctttttgttgggttggcttgtggcttcatga |
26945361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 493
Target Start/End: Complemental strand, 26990420 - 26990357
Alignment:
| Q |
430 |
taggatagagaggatgtgcagcatcacttgtctatcctgctttttattgggttggcatgtggct |
493 |
Q |
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| T |
26990420 |
taggatagggaggaagtgcagcatcacatatctgtcttgctttttatcgggttagcatgtggct |
26990357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 495
Target Start/End: Original strand, 26977215 - 26977296
Alignment:
| Q |
413 |
agtaaatatgttttgtataggatagagaggatgtgcagcatcacttgtctatcctgctttttattgggttggcatgtggcttg |
495 |
Q |
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| T |
26977215 |
agtaaatatgttt-gtgtaggatagggaggaagtgcagcatcacatatctgtcttgcttttcattggattagtatgtggcttg |
26977296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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