View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14806_high_6 (Length: 330)
Name: NF14806_high_6
Description: NF14806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14806_high_6 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 116 - 330
Target Start/End: Complemental strand, 26633764 - 26633549
Alignment:
| Q |
116 |
tacaagctatagccatggaaaactgtttatgacatgaacttaatttttcaatttaagaggatcagaggaatattttaatttgaggtaaaaattcatttac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26633764 |
tacaagctatagccatggaaaactgtttatgacatgaacttaatttttcaatttaagaggatcagaggaatattttaatttgagataaaaattcatttac |
26633665 |
T |
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| Q |
216 |
ttgacctnnnnnnnnnnnnnnnnnnnnnnnnntaagttcaccatcccaaagaaaagaggtaactctctctaa-tttctccagagcacttgacgattatac |
314 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
26633664 |
ttgacctaaaaaacacaatttaaaataaaaaataagttcaccatcccaaagaaaagaggtaactctctctaattttctccagagcacttgatgattatac |
26633565 |
T |
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| Q |
315 |
tagcacagaaccaacc |
330 |
Q |
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|||||||||||||||| |
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| T |
26633564 |
tagcacagaaccaacc |
26633549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 116 - 330
Target Start/End: Complemental strand, 26739740 - 26739525
Alignment:
| Q |
116 |
tacaagctatagccatggaaaactgtttatgacatgaacttaatttttcaatttaagaggatcagaggaatattttaatttgaggtaaaaattcatttac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26739740 |
tacaagctatagccatggaaaactgtttatgacatgaacttaatttttcaatttaagaggatcagaggaatattttaatttgagataaaaattcatttac |
26739641 |
T |
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| Q |
216 |
ttgacctnnnnnnnnnnnnnnnnnnnnnnnnntaagttcaccatcccaaagaaaagaggtaactctctctaa-tttctccagagcacttgacgattatac |
314 |
Q |
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| T |
26739640 |
ttgacctaaaaaacacaatttaaaataaaaaataagttcaccatcccaaagaaaagaggtaactctctctaattttctccagagcacttgatgattatac |
26739541 |
T |
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| Q |
315 |
tagcacagaaccaacc |
330 |
Q |
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| T |
26739540 |
tagcacagaaccaacc |
26739525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 82 - 220
Target Start/End: Original strand, 27701521 - 27701659
Alignment:
| Q |
82 |
ttccaccggatgagtgattgatcgtttaaaattttacaagctatagccatggaaaactgtttatgacatgaacttaatttttcaatttaagaggatcaga |
181 |
Q |
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||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||||||| |
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| T |
27701521 |
ttccaccggataagtaattgatcatttaaaattttacaagctatagccatggaaaactggtcatgacatgaacttaatttttgaaattaagaggatcaga |
27701620 |
T |
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| Q |
182 |
ggaatattttaatttgaggtaaaaattcatttacttgac |
220 |
Q |
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| T |
27701621 |
ggaatgttttaatttgaggtaaaaattcatttaattgac |
27701659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 26633852 - 26633796
Alignment:
| Q |
15 |
cataggggaacgtaagagaagagtttgtgatgatagggaagagtgaagattttggat |
71 |
Q |
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| T |
26633852 |
catagaggaacgtaagagaagagtttgtgatgatagggaagagtgaagattttggat |
26633796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 26739828 - 26739772
Alignment:
| Q |
15 |
cataggggaacgtaagagaagagtttgtgatgatagggaagagtgaagattttggat |
71 |
Q |
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| T |
26739828 |
catagaggaacgtaagagaagagtttgtgatgatagggaagagtgaagattttggat |
26739772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 17088601 - 17088525
Alignment:
| Q |
248 |
taagttcaccatcccaaagaaaagaggtaactctctctaatttctccagagcacttgacgattatactagcacagaac |
325 |
Q |
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| T |
17088601 |
taagttcaccatcccaaagaaaagaggcaactctct-aattttttctagagcactttatgatgatactaacacagaac |
17088525 |
T |
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