View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14806_high_9 (Length: 284)
Name: NF14806_high_9
Description: NF14806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14806_high_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 38485903 - 38486186
Alignment:
| Q |
1 |
caagcttttggcttttctagattcagaatccgaagtagagatcacagagggatcaggtgaactttttccaacgaatcacgatattccagacggtatcaac |
100 |
Q |
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| T |
38485903 |
caagcttttggcttttctagattctgcatcagaagtagagatcacagaaggctcacgtgaacttgttccaacgaatcaagatattccagacggtatcaac |
38486002 |
T |
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| Q |
101 |
tcgcaaaagtcatcattttctgaagcaagcagtacagtaagtttgttcaaaggccatgactatggaactgcattaatgaaattcacatatgtgattgctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38486003 |
tcgcaaaagtcatcattttctgaagcaagcagtacagtaagtttgttcaaaggccatgactatggaactgcattaatgaaattcacatatgtgatcgctt |
38486102 |
T |
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| Q |
201 |
gtcagatatatggaactcaaaaggcaagaaaggatcctcatgccgatgaaattttgtatttaatgaaaaacaatgaatccctaa |
284 |
Q |
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| T |
38486103 |
gtcagatatatggaactcaaaaggcaagaaaggatcctcatgccgatgaaattttgtatttaatgaaaaacaatgaagccctaa |
38486186 |
T |
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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 277
Target Start/End: Original strand, 30120432 - 30120584
Alignment:
| Q |
128 |
agcagtacagtaagtttgttc---aaaggccatgactatggaactgcattaatgaaattcacatatgtgattgcttgtcagatatatggaactcaaaagg |
224 |
Q |
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|||||| ||||||||||||| |||||||| || ||||| ||||| || |||||||||||||||||| ||||||||||||| ||||||||||| |||| |
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| T |
30120432 |
agcagttcagtaagtttgttatttaaaggccacgagtatgggactgctttgatgaaattcacatatgtggttgcttgtcagatttatggaactcagaagg |
30120531 |
T |
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| Q |
225 |
caagaaaggatcctcatgccgatgaaattttgtatttaatgaaaaacaatgaa |
277 |
Q |
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|| |||||||| ||||| || |||||||||||| ||||||||||||||||| |
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| T |
30120532 |
aaaagaaggatccccatgctgaggaaattttgtatctaatgaaaaacaatgaa |
30120584 |
T |
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