View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14806_low_11 (Length: 288)
Name: NF14806_low_11
Description: NF14806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14806_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 12656575 - 12656338
Alignment:
| Q |
1 |
ttttgtgatgtatagggcaaaagagtgtgacacgcggcataaattcttccaggtaaattaactcaccgagaaccgtccaaacccatcacagcccttgtga |
100 |
Q |
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| T |
12656575 |
ttttgtgatgtttagggcaaaagagtgtgacacgcggcatgaattcttccaggtaaattaactcaccgagaaccgtccaaacccatcactgcccttgcga |
12656476 |
T |
|
| Q |
101 |
agtgtactcctcttgctagctagaacattcatttcctttgacaaatcatctaataac--nnnnnnnnnaccgggtaatctattaagtagaattcactttt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |
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| T |
12656475 |
agtgtactcctcttgctagctagaacattcatttcctttgacaaatcatctaataactttttttttttaccaggtaatctattaggtagaattcactttt |
12656376 |
T |
|
| Q |
199 |
tcttaaagatgaataaatgagatatttagaactcgaac |
236 |
Q |
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| || |||||||||||||||| ||||||||| |||||| |
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| T |
12656375 |
tttttaagatgaataaatgaggtatttagaattcgaac |
12656338 |
T |
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