View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14806_low_16 (Length: 264)
Name: NF14806_low_16
Description: NF14806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14806_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 52953449 - 52953199
Alignment:
| Q |
1 |
aacactttgtaattcatatactgagacaacaaatcggaagatttctcacaagaatgacccacagatgaaaccatttcagtcattccagtcttggaatctt |
100 |
Q |
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| T |
52953449 |
aacactttgtaattcatatactgagacaacaaatcagaagatttctcacaagaatgacccacagatgaaaccatttcagtcattccagtcttggaatctt |
52953350 |
T |
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| Q |
101 |
tacccaaaggaagtttatgagggttgagaaagagtttaagctcttttgcaatgttgggtcttgaaagatcaaaactttcataaccaagaagctgtttttc |
200 |
Q |
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| T |
52953349 |
tacccaaaggaagtttatgagggttgagaaagagtttaagctcttttgcaatgttgggtcttgaaagatcaaaactttcataaccaagaagctgtttttc |
52953250 |
T |
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| Q |
201 |
aatctgggttagtttcttttgagattgatcaatttctctgagtataagtga |
251 |
Q |
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| T |
52953249 |
aatctgggttagtttcttttgagattgatcaatttctctgagtataagtga |
52953199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 251
Target Start/End: Original strand, 31904080 - 31904327
Alignment:
| Q |
4 |
actttgtaattcatatactgagacaacaaatcggaagatttctcacaagaatgacccacagatgaaaccatttcagtcattccagtcttggaatctttac |
103 |
Q |
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| T |
31904080 |
actttgtaattcatatactgggacatcaaatcagaagatttctcacaagaatagcccatagatgaaaccatctcagtcattccagttttggaatctttac |
31904179 |
T |
|
| Q |
104 |
ccaaaggaagtttatgagggttgagaaagagtttaagctcttttgcaatgttgggtcttgaaagatcaaaactttcataaccaagaagctgtttttcaat |
203 |
Q |
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| T |
31904180 |
ccaaaggaagtttatgagggttaagaaaaagtttgagctcttttgcaatgttgggtcttgaaagatcaaaactttcatagccaagaagctgtttttctat |
31904279 |
T |
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| Q |
204 |
ctgggttagtttcttttgagattgatcaatttctctgagtataagtga |
251 |
Q |
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| T |
31904280 |
ctgggctagtttcttttgagactgatcaatttctctgagtataagtga |
31904327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 42 - 251
Target Start/End: Complemental strand, 7760285 - 7760076
Alignment:
| Q |
42 |
tttctcacaagaatgacccacagatgaaaccatttcagtcattccagtcttggaatctttacccaaaggaagtttatgagggttgagaaagagtttaagc |
141 |
Q |
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|||||||||||||||||| || ||||| ||||||||||| || ||||| | ||||| || || |||||||||| ||| | ||| |||| ||| ||| |
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| T |
7760285 |
tttctcacaagaatgaccaactgatgacaccatttcagtgatcccagttcttgaatccttgcctaaaggaagttgatgtctttggaggaagattttcagc |
7760186 |
T |
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| Q |
142 |
tcttttgcaatgttgggtcttgaaagatcaaaactttcataaccaagaagctgtttttcaatctgggttagtttcttttgagattgatcaatttctctga |
241 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| || ||||||| |
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| T |
7760185 |
tcatttgcaatgttgggtcttgaaagatcaatgctttcataaccaagaagctgtttttccatctgggctagtttcttttgagacaaatctatctctctga |
7760086 |
T |
|
| Q |
242 |
gtataagtga |
251 |
Q |
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|||| ||||| |
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| T |
7760085 |
gtatgagtga |
7760076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 12052524 - 12052579
Alignment:
| Q |
22 |
tgagacaacaaatcggaagatttctcacaagaatgacccacagatgaaaccatttc |
77 |
Q |
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| T |
12052524 |
tgagacaagaattcagaagatttctcactagaatgacccacaaatgaaaccatttc |
12052579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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