View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14806_low_19 (Length: 256)
Name: NF14806_low_19
Description: NF14806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14806_low_19 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 256
Target Start/End: Complemental strand, 52953764 - 52953517
Alignment:
| Q |
9 |
acatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcatacccattaaccaaatcaaagcaatgcatgcaacctctattca |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
52953764 |
acatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcatatccattaaccaaatcaaagcaatgcatgcaacctctattca |
52953665 |
T |
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| Q |
109 |
atttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953664 |
atttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatg |
52953565 |
T |
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| Q |
209 |
aagataatttaccttagaagaaacagatttagcaaaacaccttcttct |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953564 |
aagataatttaccttagaagaaacagatttagcaaaacaccttcttct |
52953517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 256
Target Start/End: Original strand, 31903762 - 31904009
Alignment:
| Q |
9 |
acatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcatacccattaaccaaatcaaagcaatgcatgcaacctctattca |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
31903762 |
acatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcataaccattaaccaaatcaaagcaatgcatgcaacccctattca |
31903861 |
T |
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| Q |
109 |
atttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatg |
208 |
Q |
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| T |
31903862 |
atttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggtttccaaagtgaagttggaaaaggatg |
31903961 |
T |
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| Q |
209 |
aagataatttaccttagaagaaacagatttagcaaaacaccttcttct |
256 |
Q |
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| T |
31903962 |
aagataatttaccttagaagaaacagatttagcaaaacaccttcttct |
31904009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 31673777 - 31673573
Alignment:
| Q |
9 |
acatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcatacccattaaccaaatcaaagcaatgcatgcaacctctattca |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
31673777 |
acatcagcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcataaccattaaccaaatcaaagcaatgcatgcaacccctattca |
31673678 |
T |
|
| Q |
109 |
atttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
31673677 |
atttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttgctaacaggtttccaaagtgaagttggaaaaggatg |
31673578 |
T |
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| Q |
209 |
aagat |
213 |
Q |
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||||| |
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| T |
31673577 |
aagat |
31673573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 31921942 - 31922101
Alignment:
| Q |
54 |
ctttgattctcatacccattaaccaaatcaaagcaatgcatgcaacctctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccac |
153 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31921942 |
ctttgattctcataaccattaaccaaatcaaagcaatgcatgcaacccctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccac |
31922041 |
T |
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| Q |
154 |
tccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagat |
213 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31922042 |
tccaattaacagttttgttactaacaggtttccaaagtgaagttggaaaaggatgaagat |
31922101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 7760638 - 7760454
Alignment:
| Q |
9 |
acatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcatacccat---taaccaaatcaaagcaatgcatgcaacctctat |
105 |
Q |
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||||||||||| | ||||||||| |||||| | ||||| ||||| || |||||||||| ||| ||||||||||||| |||| | ||| ||||| |
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| T |
7760638 |
acatcatcaaccaaaaaatcatttttactttttgacttcacaaatctctgattctcatttccaccactaaccaaatcaaaacaattaacacaatctctac |
7760539 |
T |
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| Q |
106 |
tcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggcttccaaag |
190 |
Q |
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|||||||||| || |||||||| |||||| |||||||| | |||||||||||||||| ||| || |||| || |||||||||||| |
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| T |
7760538 |
tcaatttctttcctttcaaacattcaaaactcttacaattcaaaccactccaattaaaagtgttattaccaagaggcttccaaag |
7760454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 28960052 - 28959879
Alignment:
| Q |
9 |
acatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcatacccat---taaccaaatcaaagcaatgcatgcaacctctat |
105 |
Q |
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||||||||||| | ||||||||| |||||| | ||||| ||||| || |||||||||| ||| ||||||||||||| |||| | ||| ||||| |
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| T |
28960052 |
acatcatcaaccaaaaaatcatttttactttttgacttcacaaatctctgattctcatttccaccactaaccaaatcaaaacaattaacacaatctctac |
28959953 |
T |
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| Q |
106 |
tcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaaca |
179 |
Q |
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|||||||||| || |||||||| |||||| |||||||| | |||||||||||||||| ||| || |||| |||| |
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| T |
28959952 |
tcaatttctttcctttcaaacattcaaaactcttacaattcaaaccactccaattaaaagtgttattaccaaca |
28959879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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