View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14806_low_23 (Length: 223)
Name: NF14806_low_23
Description: NF14806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14806_low_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 51666718 - 51666505
Alignment:
| Q |
6 |
attaaggaacaaaaagaaggaaggtgttaggatttaaggaacttacaatgtacaataacatcataggggtaccttttgagaaactgctttgcagcatatt |
105 |
Q |
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| T |
51666718 |
attaaggaacaaaaagaaggaaggtgttaggatttaaggaacttacaatgtacaataacatcataggggtaccttttgagaaactgctttgcagcatatt |
51666619 |
T |
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| Q |
106 |
tccaattatgagcactgcaaaacaatnnnnnnnnnnnnnggcattgttagtagctaagttactattaaaatattgataaaaagtattaaaaatcatattg |
205 |
Q |
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| T |
51666618 |
tccaattatgagcactgcaaaacaat----aaaaaaaaaggcattgttaatagctaagttactattaaaatattgataaaaagtattaaaaatcatattg |
51666523 |
T |
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| Q |
206 |
gatcaacaaaccaaacct |
223 |
Q |
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|||||||||||||||||| |
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| T |
51666522 |
gatcaacaaaccaaacct |
51666505 |
T |
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