View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14806_low_3 (Length: 452)
Name: NF14806_low_3
Description: NF14806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14806_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 452
Target Start/End: Original strand, 7480631 - 7481075
Alignment:
| Q |
15 |
atgaaaatgattttggggcaactttatgttgggaaacacaatataagtactttagataattagaaatcaacagggagaggattcaatctttcctctattg |
114 |
Q |
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| T |
7480631 |
atgaaaatgattttggggcaactttatgttgggaaacacaatataagtattttagataattagaaatcaatagggagaggattcaatctttcctctattg |
7480730 |
T |
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| Q |
115 |
aatccttgagggaaaatcatctaggttgataaatttgtaagctactttttataaagatttattgatgatggatcaaagagttggtttttccttgtaattg |
214 |
Q |
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| T |
7480731 |
aatgcttgagtgaaaatcatctaggttgatagatttgtaagctactttttatgaagatttattgatgatggatcaaagagttggtttttccttgtaattg |
7480830 |
T |
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| Q |
215 |
tacgttaccnnnnnnnggattgaact----------acatcaactttattcttctactatctatctttgtctttggtgtgattgtttggaatttcgtttg |
304 |
Q |
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| T |
7480831 |
tacgttacctttttttggattgaactacatcaacaaacatcaactttattcttctactatctatctttctctttggtgtgattgtttggaatttcgtttg |
7480930 |
T |
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| Q |
305 |
cacat-caaaaataattgttctaggctgaatctttatctgccaagttatttaatttgattgccatcattatttaaattttttaacaaaatgttatgttat |
403 |
Q |
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| T |
7480931 |
cacataaaaaaagaattgttctaggctgaatctttatctgccaagtcatttaatttgattgctattattatttaaattttttaacaaaatgttatgttat |
7481030 |
T |
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| Q |
404 |
aaagtttctgtctaatattaattgtgtatgagggacctgtccaatattc |
452 |
Q |
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| T |
7481031 |
aaagtttctgtctaat----attgtttttaagggacctgtccaatattc |
7481075 |
T |
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