View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14806_low_4 (Length: 423)
Name: NF14806_low_4
Description: NF14806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14806_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 5111964 - 5112272
Alignment:
| Q |
18 |
gcaacatattaatgttcaacaacacatcattgcaatacttatatcttgaatataataatatgaccggcattcttccatcaaatgtttgtcaatggcttcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5111964 |
gcaacatattaatgttcaacaacacatcattgcaatacttatatcttggatataataatatgaccggcgttcttccatcaaatgtttgtcaatggcttcc |
5112063 |
T |
|
| Q |
118 |
aaaccttagattactctatctttttcataatggtttttctggtgagattccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccggg |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5112064 |
aaaccttagattactctatctttttcataatgatttttctggtgagattccaaatgtttggcgtgattgcaaagagttggaagatttgcaactatccggg |
5112163 |
T |
|
| Q |
218 |
aataattttgacaaaggacgtattccggctgatattggaaaattgatcaaacttcaatttttgtatctcgcagaaaacaacttggagggtaagatatttg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5112164 |
aataattttgacaaaggacgtattccggctgatattggaaaattgatcaaacttcaagttttgtatctcgcagaaaacaacttcgagggtaagatatttg |
5112263 |
T |
|
| Q |
318 |
tgtcaatat |
326 |
Q |
| |
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||||||||| |
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| T |
5112264 |
tgtcaatat |
5112272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 5095206 - 5095514
Alignment:
| Q |
18 |
gcaacatattaatgttcaacaacacatcattgcaatacttatatcttgaatataataatatgaccggcattcttccatcaaatgtttgtcaatggcttcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5095206 |
gcaacatattaatgttcaacaacacatcattgcaatacttatatcttggatataataatatgaccggcattcttccatcaaatgtttgtcaagagcttcc |
5095305 |
T |
|
| Q |
118 |
aaaccttagattactctatctttttcataatggtttttctggtgagattccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccggg |
217 |
Q |
| |
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||||||||||| |||||||||| ||||||||| ||||| ||||| || ||||||||||||| |||||||||||||||||||||||| ||| | ||| |
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| T |
5095306 |
aaaccttagatcactctatcttcttcataatgatttttatggtgcaatgccaaatgtttggcatgattgcaaagagttggaagatttagaattgtcctta |
5095405 |
T |
|
| Q |
218 |
aataattttgacaaaggacgtattccggctgatattggaaaattgatcaaacttcaatttttgtatctcgcagaaaacaacttggagggtaagatatttg |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |
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| T |
5095406 |
aataattttgacaaaggacgtattccggctgacattggaaaattggccaaacttcaatttctgtatcttgcagataacaacttggagggtaagatatttt |
5095505 |
T |
|
| Q |
318 |
tgtcaatat |
326 |
Q |
| |
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|| |||||| |
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| T |
5095506 |
tgccaatat |
5095514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 70 - 314
Target Start/End: Complemental strand, 5083083 - 5082839
Alignment:
| Q |
70 |
taataatatgaccggcattcttccatcaaatgtttgtcaatggcttccaaaccttagattactctatctttttcataatggtttttctggtgagattcca |
169 |
Q |
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||||||| |||| ||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||| | ||||| | ||||||||||||| ||| |
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| T |
5083083 |
taataatctgactggcattcttccatcaaatgtttgtcaaggacttccaaaccttagattactttatctttatgttaatgatctttctggtgagatgcca |
5082984 |
T |
|
| Q |
170 |
aatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataattttgacaaaggacgtattccggctgatattggaaaattgatcaaac |
269 |
Q |
| |
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|||||||||| | ||||||||||||||||||| ||| |||||| ||||||||||||||||||| ||| || ||||| |||| ||| ||| || | |
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| T |
5082983 |
aatgtttggcattattgcaaagagttggaagaattgatactatctttcaataattttgacaaaggacatatgccagctgacattgcaaacttgccaaagc |
5082884 |
T |
|
| Q |
270 |
ttcaatttttgtatctcgcagaaaacaacttggagggtaagatat |
314 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||||||| |
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| T |
5082883 |
ttcaatctttgtatcttattagcaacaacttggagggtaagatat |
5082839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 413
Target Start/End: Original strand, 5112346 - 5112415
Alignment:
| Q |
344 |
aaatattaagtttttgcttattgttttcttaaagttaaaaatgttgccattgattttgatttttcctatg |
413 |
Q |
| |
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||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5112346 |
aaatattaagtttttatttattgtttccttaaagttaaaaatgttgccattgattttgatttttcctatg |
5112415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 14427524 - 14427228
Alignment:
| Q |
20 |
aacatattaatgttcaacaacacatcattgcaatacttatatcttgaatataataatatgaccggcattcttccatcaaatgtttgtcaatggcttccaa |
119 |
Q |
| |
|
|||||||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||| || || |||||| ||||| |||||| | ||||||||| |
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| T |
14427524 |
aacatattgatgttcaacaactcatcgttgcaatacttatatcttggatataataatatgactggaatccttccaacaaatatttgtctagggcttccaa |
14427425 |
T |
|
| Q |
120 |
accttagattactctatctttttcataatggtttttctggtgagattccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaa |
219 |
Q |
| |
|
||||||||| ||||||||||| | ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||| || |
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| T |
14427424 |
accttagatcactctatctttatgctaatgatttttctggtatgatgccaaatgtttggcgtgattgcaaagagttggaagaattggaattatccaaaaa |
14427325 |
T |
|
| Q |
220 |
taattttgacaaaggacgtattccggctgatattggaaaattgatcaaacttcaatttttgtatctcgcagaaaacaacttggagggtaagatattt |
316 |
Q |
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||||||||||||||||||||| || ||||| ||||||||||||| ||||||||| | | ||||||||||| |||||||||||||||||||||||||| |
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| T |
14427324 |
taattttgacaaaggacgtatacctgctgacattggaaaattgaccaaacttcagtctctgtatctcgcaaaaaacaacttggagggtaagatattt |
14427228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 25 - 313
Target Start/End: Original strand, 16874655 - 16874943
Alignment:
| Q |
25 |
attaatgttcaacaacacatcattgcaatacttatatcttgaatataataatatgaccggcattcttccatcaaatgtttgtcaatggcttccaaacctt |
124 |
Q |
| |
|
|||||||||||||| | |||| |||||||| || |||| | |||||| |||| || ||||||||||||||| |||||||| || ||||||| ||| |
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| T |
16874655 |
attaatgttcaacagctcatctttgcaatatttggcacttggttttaataacctgactggtattcttccatcaaatatttgtcaagggtttccaaatctt |
16874754 |
T |
|
| Q |
125 |
agattactctatctttttcataatggtttttctggtgagattccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataatt |
224 |
Q |
| |
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| |||||||||||||| |||||||| |||||||||| | ||||||||| |||||||| |||||||||||||||||||||| || |||||| ||||||| |
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| T |
16874755 |
aaattactctatctttatcataatgatttttctggtaaaattccaaatatttggcgttattgcaaagagttggaagatttagagctatccttcaataatt |
16874854 |
T |
|
| Q |
225 |
ttgacaaaggacgtattccggctgatattggaaaattgatcaaacttcaatttttgtatctcgcagaaaacaacttggagggtaagata |
313 |
Q |
| |
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|||| |||||||||||||| |||| |||||||| |||| ||| |||| | ||||||||| | ||||||||||||||||||||| |
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| T |
16874855 |
ttgataaaggacgtattccatctgagattggaaacttgaccaagcttcggtatttgtatcttcctagcaacaacttggagggtaagata |
16874943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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