View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14806_low_9 (Length: 300)
Name: NF14806_low_9
Description: NF14806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14806_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 3269035 - 3269230
Alignment:
| Q |
1 |
tgaatatcacgaatgatttttctcgaaaggtatataggtgtatttattgaaatagaaatatatgaagtatttgccaaattgaaattgtggaggacaaaga |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3269035 |
tgaatatcacaaatgatttttctcgaaaggtatataggtgtatttattgaa-tagaaatatatgaagtatttgccaaatttaaattgtggaggacaaaga |
3269133 |
T |
|
| Q |
101 |
tagaaaattagatggggctgnnnnnnntaagtatatgagataagataattgtagaaagatgagtgctaagaaaattcacttccaccttaatttcttc |
197 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3269134 |
tagaaaattagatggggctgaaaaaaataagtatatgacataagataattgtagaaagatgagtgctaagaaaattcacttccaccttaatttcttc |
3269230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 3269257 - 3269330
Alignment:
| Q |
225 |
tggagtgttaatatcctttctcttgtacgaaatgttcctaaatttagtttcgaactcaacattcagtattattt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
3269257 |
tggagtgttaatatcctttctcttgtacgaaatgttcctaaatttagtttggaactcaacattcagtataattt |
3269330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University