View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14807_high_4 (Length: 211)
Name: NF14807_high_4
Description: NF14807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14807_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 36135004 - 36134856
Alignment:
| Q |
50 |
ctcagagtggaatttctcagtttcaactgtttaccaataataaaaaattaatttgaaaccgtcaagaaaagaaaactacaattaatatccactactgctc |
149 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36135004 |
ctcagagaggaatttctcagtttcaactgtttaccaataataaaaaattaatttgaaaccgtcaagaaaagaaaactacaattaatatccactactgctc |
36134905 |
T |
|
| Q |
150 |
atagtatatattggtttcatttttgtatatggaatcaatttagtataat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36134904 |
atagtatatattggtttcatttttgtatatggaatcaatttaatataat |
36134856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 36135070 - 36135038
Alignment:
| Q |
18 |
aagctttcccttgtgctcgatcaaatcattttc |
50 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
36135070 |
aagctttcccttgtgctcgatcaaatcattttc |
36135038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 30815193 - 30815043
Alignment:
| Q |
50 |
ctcagagtggaatttctcagtttcaactgtttaccaataataaaaaatt-aatttgaaaccgtcaagaaaagaaaa-ctacaattaatatccactactgc |
147 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| | ||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
30815193 |
ctcagagcggaatttctcagtttcaactgtttgccaataataaaaaaaacaatttgaatttgacaaacaaagaaaaactacaattaatctccactactgc |
30815094 |
T |
|
| Q |
148 |
tcatagtatatattggtttcatttttgtatatggaatcaatttagtataat |
198 |
Q |
| |
|
|| ||| ||||||||| | ||||| || |||||||||||||||| |||||| |
|
|
| T |
30815093 |
tcgtagaatatattggctccatttgtgcatatggaatcaatttaatataat |
30815043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 30815259 - 30815227
Alignment:
| Q |
18 |
aagctttcccttgtgctcgatcaaatcattttc |
50 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
30815259 |
aagctttcccttgtgctcgatcaaatctttttc |
30815227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University