View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14807_high_5 (Length: 207)

Name: NF14807_high_5
Description: NF14807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14807_high_5
NF14807_high_5
[»] chr6 (2 HSPs)
chr6 (16-189)||(4183265-4183438)
chr6 (16-189)||(4744109-4744279)
[»] chr1 (8 HSPs)
chr1 (33-83)||(51829379-51829429)
chr1 (118-150)||(51221501-51221533)
chr1 (118-174)||(51757023-51757079)
chr1 (18-74)||(51858231-51858287)
chr1 (118-150)||(51858325-51858357)
chr1 (33-86)||(51757105-51757158)
chr1 (113-150)||(51763230-51763266)
chr1 (113-150)||(51854663-51854700)
[»] chr3 (1 HSPs)
chr3 (110-150)||(43997276-43997316)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 4183438 - 4183265
Alignment:
Q  16 aatatttacaaacctcatttaccttagtctatgatcgtttcacttctaattataagattatcgctctttctgtacgcgattattatcnnnnnnncagaga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  4183438 aatatttacaaacctcatttaccttagtctatgatcgtttcacttctaattataagattatcgctctttctgtacgcgattattatcaaaaaaacagaga 4183339  T
Q  116 aattaatgttcatactttgggtaccgattattggaaagggattcatgatttcccaaatcgtcacctcattcaag 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4183338 aattaatgttcatactttgggtaccgattattggaaagggattcatgatttcccaaatcgtcacctcattcaag 4183265  T

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Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 4744279 - 4744109
Alignment:
Q  16 aatatttacaaacctcatttaccttagtctatgatcgtttcacttctaattataagattatcgctctttctgtacgcgattattatcnnnnnnncagaga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||       ||||||    
T  4744279 aatatttacaaacctcatttaccttagtctatgatcgtttcacttctaattataagattatcgctctttctgtacgcga---ttatcaaaaaaacagaga 4744183  T
Q  116 aattaatgttcatactttgggtaccgattattggaaagggattcatgatttcccaaatcgtcacctcattcaag 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4744182 aattaatgttcatactttgggtaccgattattggaaagggattcatgatttcccaaatcatcacctcattcaag 4744109  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 51829379 - 51829429
Alignment:
Q  33 tttaccttagtctatgatcgtttcacttctaattataagattatcgctctt 83  Q
    ||||||||||| |||||||||||||||  ||||||||||||||| ||||||    
T  51829379 tttaccttagtgtatgatcgtttcactcataattataagattattgctctt 51829429  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 51221533 - 51221501
Alignment:
Q  118 ttaatgttcatactttgggtaccgattattgga 150  Q
    |||||||||||||||||||||||||||||||||    
T  51221533 ttaatgttcatactttgggtaccgattattgga 51221501  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 51757079 - 51757023
Alignment:
Q  118 ttaatgttcatactttgggtaccgattattggaaagggattcatgatttcccaaatc 174  Q
    |||| |||||||||||||||||||||||||||| | |||| || || ||||||||||    
T  51757079 ttaacgttcatactttgggtaccgattattggagaaggatccaggacttcccaaatc 51757023  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 51858231 - 51858287
Alignment:
Q  18 tatttacaaacctcatttaccttagtctatgatcgtttcacttctaattataagatt 74  Q
    ||||||||| ||||||| |||||||| |||||||||||||||  ||| |||||||||    
T  51858231 tatttacaatcctcattcaccttagtttatgatcgtttcactaataactataagatt 51858287  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 150
Target Start/End: Original strand, 51858325 - 51858357
Alignment:
Q  118 ttaatgttcatactttgggtaccgattattgga 150  Q
    |||||||||||||||||||||||||||||||||    
T  51858325 ttaatgttcatactttgggtaccgattattgga 51858357  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 51757158 - 51757105
Alignment:
Q  33 tttaccttagtctatgatcgtttcacttctaattataagattatcgctctttct 86  Q
    |||||||||||||| ||||||||||||  |||||| |||||||| ||| |||||    
T  51757158 tttaccttagtctacgatcgtttcactaataattacaagattattgctatttct 51757105  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 51763266 - 51763230
Alignment:
Q  113 agaaattaatgttcatactttgggtaccgattattgga 150  Q
    |||||||||||||| |||||||||||||||||||||||    
T  51763266 agaaattaatgttc-tactttgggtaccgattattgga 51763230  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 51854663 - 51854700
Alignment:
Q  113 agaaattaatgttcatactttgggtaccgattattgga 150  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  51854663 agaagttaatgctcatactttgggtaccgattattgga 51854700  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 43997276 - 43997316
Alignment:
Q  110 cagagaaattaatgttcatactttgggtaccgattattgga 150  Q
    ||||||| ||||||||||||||||||||||  |||||||||    
T  43997276 cagagaagttaatgttcatactttgggtactaattattgga 43997316  T

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