View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14807_low_2 (Length: 325)
Name: NF14807_low_2
Description: NF14807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14807_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 45181654 - 45181347
Alignment:
| Q |
1 |
ttgtttgacatcatattttcttgggttgtgtatgtgtacgtgtacgtgtgatacaagatcaaggtgactacacttgatgtattgaaatat---------- |
90 |
Q |
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| T |
45181654 |
ttgtttgacatcatattttcttgggttgtgtatgtgt----------gtgatacaagatcaaggtgactacacttgatgtattgaaatatatattatata |
45181565 |
T |
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| Q |
91 |
-gcatgtaatttataatccttgtcttatgcggtatacccctggaattgatatttggaacattggatgcatattttgcagaagtgcttactgggaggccat |
189 |
Q |
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| T |
45181564 |
tgcatgtaatttataatccttgtcttatgcggtatacccctggaattgatatttggagcattggatgcatattt-gcagaagtgcttactgggaggccat |
45181466 |
T |
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| Q |
190 |
tgtttcctgggacaaatacgaagaaccaattggatatcatgactgatttacttggaactcctcctcctgagtccatggtcaatgtaagtttatcaaaatc |
289 |
Q |
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| T |
45181465 |
tgtttcctcggacaaataggaagaaccaattggatatcatgactgatttgcttggaactcctcctcctgagtccatggtcaacgtaagtttatcaaaatc |
45181366 |
T |
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| Q |
290 |
tattccgcagttttatgaa |
308 |
Q |
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| T |
45181365 |
tattccgcagttttatgaa |
45181347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 72 - 265
Target Start/End: Complemental strand, 45174690 - 45174498
Alignment:
| Q |
72 |
acttgatgtattgaaatatgcatgtaatttataatccttgtcttatgcggtatacccctggaattgatatttggaacattggatgcatattttgcagaag |
171 |
Q |
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| T |
45174690 |
acttgatgtattgaaatatgtatgtaatttatattccctttcttatgcagtatacacctggaattgatatttggagcattggatgcata-tttgcagaaa |
45174592 |
T |
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| Q |
172 |
tgcttactgggaggccattgtttcctgggacaaatacgaagaaccaattggatatcatgactgatttacttggaactcctcctcctgagtccat |
265 |
Q |
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| T |
45174591 |
tgcttactgggaggccattgtttcctgggaaaaatgtggtgcatcaattggatatcatgactgatttgcttggcactcctcctcctgagtccat |
45174498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 29961651 - 29961466
Alignment:
| Q |
79 |
gtattgaaatatgcatgtaatttataatccttgtcttatgcggtatacccctggaattgatatttggaacattggatgcatattttgcagaagtgcttac |
178 |
Q |
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| T |
29961651 |
gtattgaaatatgtatgtaatttcaaattcttgtcttttgcagtatactccagcgattgatatttggagcattggatgcata-tttgcagaaatgcttag |
29961553 |
T |
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| Q |
179 |
tgggaggccattgtttcctgggacaaatacgaagaaccaattggatatcatgactgatttacttggaactcctcctcctgagtccat |
265 |
Q |
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| T |
29961552 |
tggcaagccattgtttcctgggaaaaatgtggtgcaccagttagacctcatgactgatttgcttggtactcctcctactgaatccat |
29961466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 30814718 - 30814788
Alignment:
| Q |
128 |
cctggaattgatatttggaacattggatgcatattttgcagaagtgcttactgggaggccattgtttcctgg |
199 |
Q |
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|||| ||||||||| |||| |||||| ||||| |||||| ||||||||||| || | ||||||||||||||| |
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| T |
30814718 |
cctgcaattgatatatggagcattggttgcat-ttttgcggaagtgcttacaggaaagccattgtttcctgg |
30814788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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