View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14808_high_10 (Length: 352)
Name: NF14808_high_10
Description: NF14808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14808_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 12881489 - 12881154
Alignment:
| Q |
19 |
ttgcgaacataaaaagaatctccattcccactagtaatatcaccaacactgagtgccaagtgtgtgaaagctacatgtatcactttcttaatcccaccca |
118 |
Q |
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| T |
12881489 |
ttgcaaacataaaaagaatctccattcccactagtaatatcaccaacactgagtgccaagtgtgtgaaagctacatgtatcactttcttaatcccaccca |
12881390 |
T |
|
| Q |
119 |
tgtgttgggttgtgttcaatgggattgtaggaagatctgcatttagtgcttcctcatatgcaggtgccagccaatcttttctaacctcag---cgatgcg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
12881389 |
tgtgttgggttgtgttcaatgggattgtaggaagatctgcatttagtgcttcctcatatgcaggtgccagccaatcttttctaaccttagtgatgatgcg |
12881290 |
T |
|
| Q |
216 |
aacacgaaattcacacatttgtataagttcgaaaatgcagacatctacaacctttatgctattgccacagacaaaatccatccatcctccacat--agag |
313 |
Q |
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| T |
12881289 |
aacacgaaattcacactcttgtataagttttaaaatgcagacatctccaacctttatgctattgccacagacaaaatccgtccatcctccacatagagag |
12881190 |
T |
|
| Q |
314 |
tgacttgtatgtattttagttttagtaacagaatta |
349 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
12881189 |
tgacttgtatgtattttagttttagtaacagaatta |
12881154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 187 - 349
Target Start/End: Complemental strand, 6350966 - 6350799
Alignment:
| Q |
187 |
agccaatcttttctaacctcagcgatg---cgaacacgaaattcacacatttgtataagttcgaaaatgcagacatctacaacctttatgctattgccac |
283 |
Q |
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| T |
6350966 |
agcccatcttttccaacctcagcgatgatgcgaacacgaaattcacactcttgtataagttcgaaaatgcagacatctccaacctttatgctattgccac |
6350867 |
T |
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| Q |
284 |
agacaaaatccatccatcctccacat--agagtgacttgtatgtattttagttttagtaacagaatta |
349 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6350866 |
gaacaaaatccatccatcctccacatagagagtgacttgtatgtattttagttttagtaacagaatta |
6350799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 192 - 349
Target Start/End: Complemental strand, 6338412 - 6338253
Alignment:
| Q |
192 |
atcttttctaacctcagcgatgcgaacacgaaattcacacatttgtataagttcgaaaatgcagacatctacaacctttatgctattgccacagacaaaa |
291 |
Q |
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|||||||| ||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| |||||| |
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| T |
6338412 |
atcttttccaacctcagcaatgcgaacacgtaattcacactcacgtataagttcgaaaatgcagacatctccaacttttatgctattgccacgaacaaaa |
6338313 |
T |
|
| Q |
292 |
tccatccatcctccacataga--gtgacttgtatgtattttagttttagtaacagaatta |
349 |
Q |
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|||||||||||||||||||| |||||||||||| | | ||||| | | |||||||||| |
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|
| T |
6338312 |
gccatccatcctccacatagagtgtgacttgtatgcactctagttgttggaacagaatta |
6338253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 6383909 - 6383786
Alignment:
| Q |
192 |
atcttttctaacctcagcgatgcgaacacgaaattcacacatttgtataagttcgaaaatgcagacatctacaacctttatgctattgccacagacaaaa |
291 |
Q |
| |
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|||||||| ||| ||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||| |||| |||||| | ||||||| |||||| |
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| T |
6383909 |
atcttttccaacttcagcgacgcgaacacgtaattcacactcgtgtataagttcgaaaatgcagacatctccaacttttatgttgttgccacgaacaaaa |
6383810 |
T |
|
| Q |
292 |
tccatccatcctccacatagagtg |
315 |
Q |
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| || ||||||||||||||||||| |
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| T |
6383809 |
ttcacccatcctccacatagagtg |
6383786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 192 - 348
Target Start/End: Complemental strand, 6362191 - 6362033
Alignment:
| Q |
192 |
atcttttctaacctcagcgatgcgaacacgaaattcacacatttgtataagttcgaaaatgcagacatctacaacctttatgctattgccacagacaaaa |
291 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||||| ||||||||||||||| ||||||||| ||| ||||| ||||||||||| |||||| |
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| T |
6362191 |
atcttttccaacctcattgatgcgaacacgtaattcacactcacctataagttcgaaaatacagacatctccaatctttaggctattgccacgaacaaaa |
6362092 |
T |
|
| Q |
292 |
tccatccatcctccacataga--gtgacttgtatgtattttagttttagtaacagaatt |
348 |
Q |
| |
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| || ||||||||| |||||| |||||||| ||| | | ||||| ||| ||||||||| |
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| T |
6362091 |
ttcaaccatcctccgcatagaatgtgacttgcatgcaatctagttctaggaacagaatt |
6362033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 6423120 - 6422971
Alignment:
| Q |
202 |
acctcagcgatgcgaacacgaaattcacacatttgtataagttcgaaaatgcagacatctacaacctttatgctattgccacagacaaaatccatccatc |
301 |
Q |
| |
|
|||||||| | ||||||||| |||||||| | |||||||||||||| |||||||||| ||| ||||||| ||||| ||| |||||| |||||||| |
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| T |
6423120 |
acctcagcaacgcgaacacgtaattcacagtcatttataagttcgaaaacgcagacatctccaagctttatgttattggcacgaacaaaagacatccatc |
6423021 |
T |
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| Q |
302 |
ctccacataga--gtgacttgtatgtattttagttttagtaacagaatta |
349 |
Q |
| |
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||||||||||| |||||||||||| | | || || ||| |||||||||| |
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| T |
6423020 |
ctccacatagagtgtgacttgtatgcactctacttctaggaacagaatta |
6422971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 315
Target Start/End: Complemental strand, 6369628 - 6369506
Alignment:
| Q |
193 |
tcttttctaacctcagcgatgcgaacacgaaattcacacatttgtataagttcgaaaatgcagacatctacaacctttatgctattgccacagacaaaat |
292 |
Q |
| |
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||||||| |||| |||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||| || ||| ||||| || |||||| |
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| T |
6369628 |
tcttttccaaccccagcgatgcgaacacgtaattcacagtcatttataagttcgaaaatgcagacatctccaattttaatgttattggcatgaacaaaag |
6369529 |
T |
|
| Q |
293 |
ccatccatcctccacatagagtg |
315 |
Q |
| |
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|||||||||| ||||||||||| |
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| T |
6369528 |
acatccatcctgcacatagagtg |
6369506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 6374519 - 6374427
Alignment:
| Q |
187 |
agccaatcttttctaacctcagcgatgcgaacacgaaattcacacatttgtataagttcgaaaatgcagacatctacaacctttatgctattg |
279 |
Q |
| |
|
|||| |||||||| ||||||||| || |||||||| |||||| || | |||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
6374519 |
agcccatcttttccaacctcagcaatacgaacacgtaattcagactcgtcaataagttcgaaaatgcagacatctccaatctttatgctattg |
6374427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 15693809 - 15693876
Alignment:
| Q |
128 |
ttgtgttcaatgggattgtaggaagatctgcatttagtgcttcctcatatgcaggtgccagccaatct |
195 |
Q |
| |
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||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
15693809 |
ttgtgatcaatgggattgtaggaagatctgcattcagtgtttcctcatatgcaggtgccagccaatct |
15693876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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