View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14808_high_20 (Length: 236)
Name: NF14808_high_20
Description: NF14808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14808_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 45668380 - 45668181
Alignment:
| Q |
19 |
aaggactaccaattgacaaacttaggatatttacctgccatgaatcataagcagtattgagaagaaaaagtggtgttctaacactgacaatcaaattctg |
118 |
Q |
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| T |
45668380 |
aaggactaccaattgacaaacttaggatatttacctgccatgaatcataagcagtattgagaagaaaaagtggtgttctaacactggcaatcaaattctg |
45668281 |
T |
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| Q |
119 |
agggaagaaacactgaaaaaggagtaataaaaccagtcactgaaagttcaagttataagcaagcattagcagagatatctattttctgttctttcgaatg |
218 |
Q |
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| T |
45668280 |
agggaagaaacactgaaaaaggagtaataaaaccagtcactgaaagttcaagttataagcaagcattagcagagagatctattttctgttcttttgaatg |
45668181 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 37971857 - 37971949
Alignment:
| Q |
44 |
gatatttacctgccatgaatcataagcagtattgagaagaaaaagtggtgttctaacactgacaatcaaattctgagggaagaaacactgaaa |
136 |
Q |
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| T |
37971857 |
gatatttacctgccacgagtcataggcagtattaagaatgaatagcggggttctgacactggcaatcaagttctcaggaaagaagcactgaaa |
37971949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 51342974 - 51343058
Alignment:
| Q |
49 |
ttacctgccatgaatcataagcagtattgagaagaaaaagtggtgttctaacactgacaatcaaattctgagggaagaaacactg |
133 |
Q |
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| T |
51342974 |
ttacctgccaagtatcataagctgcattgagaagaaatagtggcgtccttacacttgcaattaaatgctgagggaaaaagcactg |
51343058 |
T |
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