View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14808_high_5 (Length: 443)

Name: NF14808_high_5
Description: NF14808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14808_high_5
NF14808_high_5
[»] chr3 (12 HSPs)
chr3 (160-429)||(33306048-33306317)
chr3 (17-70)||(15497244-15497300)
chr3 (16-70)||(20997145-20997201)
chr3 (10-70)||(43317650-43317713)
chr3 (10-70)||(33899083-33899146)
chr3 (10-70)||(35530611-35530674)
chr3 (10-70)||(35907584-35907647)
chr3 (10-70)||(38360931-38360994)
chr3 (10-70)||(42189016-42189079)
chr3 (10-70)||(47718737-47718800)
chr3 (10-70)||(52469709-52469772)
chr3 (11-70)||(54509609-54509671)
[»] chr4 (6 HSPs)
chr4 (10-70)||(40848998-40849061)
chr4 (10-70)||(46046944-46047007)
chr4 (10-70)||(2414180-2414243)
chr4 (10-70)||(8150429-8150492)
chr4 (10-70)||(41104780-41104843)
chr4 (10-57)||(43116735-43116785)
[»] scaffold1793 (1 HSPs)
scaffold1793 (10-70)||(1110-1173)
[»] chr8 (8 HSPs)
chr8 (10-70)||(37034032-37034095)
chr8 (10-70)||(12261987-12262050)
chr8 (10-70)||(27747697-27747760)
chr8 (10-70)||(29868412-29868475)
chr8 (10-70)||(36060065-36060128)
chr8 (11-70)||(6656662-6656724)
chr8 (11-70)||(6737064-6737126)
chr8 (11-70)||(6746369-6746431)
[»] chr7 (7 HSPs)
chr7 (10-70)||(23153868-23153931)
chr7 (11-70)||(5482665-5482727)
chr7 (16-70)||(36759009-36759066)
chr7 (16-70)||(36764777-36764834)
chr7 (10-70)||(23769242-23769305)
chr7 (10-70)||(35909505-35909568)
chr7 (11-70)||(4409849-4409911)
[»] chr6 (2 HSPs)
chr6 (10-70)||(34207813-34207876)
chr6 (10-70)||(174788-174851)
[»] chr5 (8 HSPs)
chr5 (10-70)||(30511114-30511177)
chr5 (10-70)||(30551454-30551517)
chr5 (10-70)||(42112530-42112593)
chr5 (16-70)||(10041999-10042056)
chr5 (10-70)||(2529283-2529345)
chr5 (10-70)||(3153427-3153490)
chr5 (10-70)||(3244701-3244764)
chr5 (10-70)||(8314066-8314129)
[»] chr1 (4 HSPs)
chr1 (10-70)||(16096092-16096153)
chr1 (10-70)||(34077525-34077588)
chr1 (10-70)||(39879922-39879985)
chr1 (10-70)||(43123458-43123521)
[»] chr2 (4 HSPs)
chr2 (10-70)||(9800312-9800375)
chr2 (10-70)||(34911857-34911920)
chr2 (10-70)||(35422998-35423061)
chr2 (10-70)||(38878346-38878409)
[»] scaffold0027 (1 HSPs)
scaffold0027 (11-70)||(138766-138828)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 160 - 429
Target Start/End: Original strand, 33306048 - 33306317
Alignment:
Q  160 tttcttggcctattgagcatccttcggaacaaaaatatctactatcgaatatcgatagacacacaacaagagcagatagaagaaggcagaaccagagcga 259  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33306048 tttcttggcctattgagcaaccttcggaacaaaaatatctactatcgaatatcgatagacacacaacaagagcagatagaagaaggcagaaccagagcga 33306147  T
Q  260 tggccatggctatgtcttctttccgcattgtatttcgtcacattctacacaccaaaaccaacaaccgtttcttcactccaccacctcgcaccacgtggcg 359  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  33306148 tggccatggctatgtcttctttccgcattgtatttcgtcacatactacacactaaaatcaacaaccgtttcttcactccaccacctcgcaccacgtggcg 33306247  T
Q  360 tcactctcttctttcttctcgcatttcatcttcaactaattacagttacaacgttatcaccaacacagac 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33306248 tcactctcttctttcttctcgcatttcatcttcaactaattacagttacaacgttatcaccaacaaagac 33306317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 15497244 - 15497300
Alignment:
Q  17 gaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||||||||||||||||||||||||    |||||||||||||||| ||||||||||    
T  15497244 gaagagaagtacttgtgaaataaattaaacagaagtagttttttaaagtagcattca 15497300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 20997145 - 20997201
Alignment:
Q  16 tgaagagaagtacttgtgaaataaatt--gagaagtagttttttaaggtagcattca 70  Q
    ||||||||||| |||||||||||||||  ||||||||||||||| | ||||||||||    
T  20997145 tgaagagaagtgcttgtgaaataaattacgagaagtagttttttgaagtagcattca 20997201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 43317650 - 43317713
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| || |||||||||||||||   ||||||||||||||||| ||||||||||    
T  43317650 gtgagttgaagagaggtgcttgtgaaataaattacggagaagtagttttttaaagtagcattca 43317713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 33899146 - 33899083
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| || |||||||||||||||   ||||||||||||||| | ||||||||||    
T  33899146 gtgagttgaagagaggtgcttgtgaaataaattgcggagaagtagttttttgaagtagcattca 33899083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 35530611 - 35530674
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| || |||||||||||||||   ||||||||||||||| | ||||||||||    
T  35530611 gtgagttgaagagaggtgcttgtgaaataaattacggagaagtagttttttgaagtagcattca 35530674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 35907584 - 35907647
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| || |||||||||||||||   ||||||||||||||| | ||||||||||    
T  35907584 gtgagttgaagagaggtgcttgtgaaataaattagagagaagtagttttttgaagtagcattca 35907647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 38360994 - 38360931
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaat---tgagaagtagttttttaaggtagcattca 70  Q
    ||||| ||||||||||| ||||||||||||||    ||||||||||||||| | ||||||||||    
T  38360994 gtgagttgaagagaagtgcttgtgaaataaatcacagagaagtagttttttgaagtagcattca 38360931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 42189016 - 42189079
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| || |||||||||||||||   ||||||||||||||| | ||||||||||    
T  42189016 gtgagttgaagagaggtgcttgtgaaataaattggggagaagtagttttttgaagtagcattca 42189079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 47718800 - 47718737
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| ||||||||||| |||||||||||||||   ||||| ||||||||| | ||||||||||    
T  47718800 gtgagttgaagagaagtgcttgtgaaataaattacagagaattagttttttgaagtagcattca 47718737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 52469709 - 52469772
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||| ||| ||||||||||||||||||   ||||||||||||||||| ||| ||||||    
T  52469709 gtgagttgaaaagaggtacttgtgaaataaattatcgagaagtagttttttaaagtaacattca 52469772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 54509671 - 54509609
Alignment:
Q  11 tgagatgaagagaagtacttgtgaaataaattg---agaagtagttttttaaggtagcattca 70  Q
    |||| |||| ||| |||||||||||||| ||||   |||||||||||||||| ||||||||||    
T  54509671 tgagttgaaaagaggtacttgtgaaatatattgtcgagaagtagttttttaaagtagcattca 54509609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 40849061 - 40848998
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| ||||||||||| |||||||||||||||   ||||||||||||||||| ||||||||||    
T  40849061 gtgagttgaagagaagtgcttgtgaaataaattacagagaagtagttttttaaagtagcattca 40848998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 46046944 - 46047007
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||||||||||||||||||||||   ||||||||||||||| | ||||||||||    
T  46046944 gtgagttgaagagaagtacttgtgaaataaattaaagagaagtagttttttgaagtagcattca 46047007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 2414180 - 2414243
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| ||| ||||||||||||||   ||||||||||||||| | ||||||||||    
T  2414180 gtgagttgaagagaggtatttgtgaaataaattgcagagaagtagttttttgaagtagcattca 2414243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 8150492 - 8150429
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||||||  ||||||||||||||   ||||||||||||||| | ||||||||||    
T  8150492 gtgagttgaagagaagtgtttgtgaaataaattacagagaagtagttttttgaagtagcattca 8150429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 41104843 - 41104780
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| || |||||||||||||||   ||||||||||||||| | ||||||||||    
T  41104843 gtgagttgaagagaggtgcttgtgaaataaattgtcgagaagtagttttttgaagtagcattca 41104780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 43116785 - 43116735
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagtttttt 57  Q
    ||||| ||||||||||| |||||||||||||||   |||||||||||||||    
T  43116785 gtgagttgaagagaagtgcttgtgaaataaattaaagagaagtagtttttt 43116735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1793 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1793
Description:

Target: scaffold1793; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 1110 - 1173
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaat---tgagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| |||||||||||||||||   |||||||||||||||| | ||||||||||    
T  1110 gtgagttgaagagaggtacttgtgaaataaattgctgagaagtagttttttgaagtagcattca 1173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 37034095 - 37034032
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| ||||||||||||||||||   ||||||||||||||| | ||||||||||    
T  37034095 gtgagttgaagagaggtacttgtgaaataaattacggagaagtagttttttgaagtagcattca 37034032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 12262050 - 12261987
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||| |||| |||||||||||||||   ||||||||||||||| | ||||||||||    
T  12262050 gtgagttgaagaaaagtgcttgtgaaataaattacagagaagtagttttttgaagtagcattca 12261987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 27747760 - 27747697
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| || |||||||||||||||   ||||||||||||||| | ||||||||||    
T  27747760 gtgagttgaagagaggttcttgtgaaataaattgtcgagaagtagttttttgaagtagcattca 27747697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 29868475 - 29868412
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| || |||||||||||||||   ||||||||||||||| | ||||||||||    
T  29868475 gtgagttgaagagaggtgcttgtgaaataaattggggagaagtagttttttgaagtagcattca 29868412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 36060065 - 36060128
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| ||||||||||||||||||   ||||||||||||||  | ||||||||||    
T  36060065 gtgagttgaagagaggtacttgtgaaataaattatagagaagtagtttttggaagtagcattca 36060128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 6656724 - 6656662
Alignment:
Q  11 tgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    |||| |||||| |||| |||||||||||||||   ||||||||||||||| | ||||||||||    
T  6656724 tgagttgaagataagtgcttgtgaaataaattatagagaagtagttttttgaagtagcattca 6656662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 6737126 - 6737064
Alignment:
Q  11 tgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    |||| |||||| |||| |||||||||||||||   ||||||||||||||| | ||||||||||    
T  6737126 tgagttgaagataagtgcttgtgaaataaattatagagaagtagttttttgaagtagcattca 6737064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 6746431 - 6746369
Alignment:
Q  11 tgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    |||| |||||| |||| |||||||||||||||   ||||||||||||||| | ||||||||||    
T  6746431 tgagttgaagataagtgcttgtgaaataaattatagagaagtagttttttgaagtagcattca 6746369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 23153931 - 23153868
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| ||||||||||| |||||||||||||||   ||||||||||||||| | ||||||||||    
T  23153931 gtgagttgaagagaagtgcttgtgaaataaattacagagaagtagttttttgaagtagcattca 23153868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 5482727 - 5482665
Alignment:
Q  11 tgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    |||| ||||||||||| |||||||||||||||   ||||||||||||||| | ||||||||||    
T  5482727 tgagttgaagagaagtgcttgtgaaataaattacagagaagtagttttttgaagtagcattca 5482665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 36759066 - 36759009
Alignment:
Q  16 tgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||||||||| |||||||||||||||   ||||||||||||||| | ||||||||||    
T  36759066 tgaagagaagtgcttgtgaaataaattatagagaagtagttttttgaagtagcattca 36759009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 36764834 - 36764777
Alignment:
Q  16 tgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||||||||| |||||||||||||||   ||||||||||||||| | ||||||||||    
T  36764834 tgaagagaagtgcttgtgaaataaattatagagaagtagttttttgaagtagcattca 36764777  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 23769242 - 23769305
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaattg---agaagtagttttttaaggtagcattca 70  Q
    ||||| |||| ||| |||||||||||||| ||||   |||||||||||||||| ||||||||||    
T  23769242 gtgagttgaaaagaggtacttgtgaaatatattgtcgagaagtagttttttaaagtagcattca 23769305  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 35909568 - 35909505
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| || |||||||||||||||   ||||||||||||||| | ||||||||||    
T  35909568 gtgagttgaagagatgtgcttgtgaaataaattacggagaagtagttttttgaagtagcattca 35909505  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 4409911 - 4409849
Alignment:
Q  11 tgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    |||| ||||||||||| |||||||||||||||   ||||| ||||||||| | ||||||||||    
T  4409911 tgagttgaagagaagttcttgtgaaataaattggggagaaatagttttttgaagtagcattca 4409849  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 34207813 - 34207876
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| ||||||||||| |||||||||||||||   ||||||||||||||| | ||||||||||    
T  34207813 gtgagttgaagagaagtgcttgtgaaataaattacagagaagtagttttttgaagtagcattca 34207876  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 174788 - 174851
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| ||||||||||| |||||||||||||||   ||||||| ||||||| | ||||||||||    
T  174788 gtgagttgaagagaagtgcttgtgaaataaattacagagaagtcgttttttgaagtagcattca 174851  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 30511114 - 30511177
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| ||||||||||| |||||||||||||||   ||||||||||||||| | ||||||||||    
T  30511114 gtgagttgaagagaagtgcttgtgaaataaattacagagaagtagttttttgaagtagcattca 30511177  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 30551454 - 30551517
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| ||||||||||| |||||||||||||||   ||||||||||||||| | ||||||||||    
T  30551454 gtgagttgaagagaagtgcttgtgaaataaattacagagaagtagttttttgaagtagcattca 30551517  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 42112530 - 42112593
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| ||||||||||| |||||||||||||||   ||||||||||||||| | ||||||||||    
T  42112530 gtgagttgaagagaagtgcttgtgaaataaattacagagaagtagttttttgaagtagcattca 42112593  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 10042056 - 10041999
Alignment:
Q  16 tgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    |||||||| ||||||||||||||||||   ||||||||||||||| | ||||||||||    
T  10042056 tgaagagatgtacttgtgaaataaattacggagaagtagttttttgaagtagcattca 10041999  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 2529345 - 2529283
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| || |||||||||||||||   ||||||||||||||||| ||||||||||    
T  2529345 gtgagttgaagagaggtgcttgtgaaataaattacggagaagtagttttttaa-gtagcattca 2529283  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 3153427 - 3153490
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaattg---agaagtagttttttaaggtagcattca 70  Q
    ||||| |||| ||| || ||||||||||| ||||   |||||||||||||||||||||||||||    
T  3153427 gtgagttgaaaagaggtgcttgtgaaatatattgtcaagaagtagttttttaaggtagcattca 3153490  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 3244764 - 3244701
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| || |||||||||||||||   ||||||||||||||| | ||||||||||    
T  3244764 gtgagttgaagagaggtgcttgtgaaataaattacggagaagtagttttttgaagtagcattca 3244701  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 8314129 - 8314066
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||||||  ||||||||||||||   ||||||||||||||| | ||||||||||    
T  8314129 gtgagttgaagagaagtgtttgtgaaataaattacagagaagtagttttttgaagtagcattca 8314066  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 16096153 - 16096092
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt-gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| || ||||||||||||||| ||||||||||||||| | ||||||||||    
T  16096153 gtgagttgaagagaggtgcttgtgaaataaattggagaagtagttttttgaagtagcattca 16096092  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 34077588 - 34077525
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaata---aattgagaagtagttttttaaggtagcattca 70  Q
    ||||| ||||||||||| |||||||||||   ||| ||||||||||||||| | ||||||||||    
T  34077588 gtgagttgaagagaagtgcttgtgaaataaataatagagaagtagttttttgaagtagcattca 34077525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 39879922 - 39879985
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| || |||||||||||||||   ||||||||||||||| | ||||||||||    
T  39879922 gtgagttgaagagaggtgcttgtgaaataaattacggagaagtagttttttgaagtagcattca 39879985  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 43123521 - 43123458
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaattg---agaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||||||  |||||||||||||||   |||||||||||||| | ||||||||||    
T  43123521 gtgagttgaagagaagtgtttgtgaaataaattgcgaagaagtagttttttgaagtagcattca 43123458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 9800312 - 9800375
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| |||||||| || |||||||||||||||   ||||||||||||||| | ||||||||||    
T  9800312 gtgagttgaagagaggtgcttgtgaaataaattgccgagaagtagttttttgaagtagcattca 9800375  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 34911920 - 34911857
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| ||||||||||| |||||||||||||||   ||||| ||||||||| | ||||||||||    
T  34911920 gtgagttgaagagaagtgcttgtgaaataaattacagagaaatagttttttgaagtagcattca 34911857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 35423061 - 35422998
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| ||||||||||| ||||||| |||||||   ||||||||||||||| | ||||||||||    
T  35423061 gtgagttgaagagaagtgcttgtgagataaattacagagaagtagtttttttaagtagcattca 35422998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 38878409 - 38878346
Alignment:
Q  10 gtgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    ||||| ||||||||||| |||||||||||||||   ||||||||||||||| |  |||||||||    
T  38878409 gtgagttgaagagaagtgcttgtgaaataaattacagagaagtagttttttgaaatagcattca 38878346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 138766 - 138828
Alignment:
Q  11 tgagatgaagagaagtacttgtgaaataaatt---gagaagtagttttttaaggtagcattca 70  Q
    |||| ||||||||||| |||||||||||||||   ||||||||||||||| | |||| |||||    
T  138766 tgagttgaagagaagtgcttgtgaaataaattacagagaagtagttttttgaagtagaattca 138828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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