View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14808_high_6 (Length: 427)
Name: NF14808_high_6
Description: NF14808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14808_high_6 |
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| [»] scaffold0008 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 170 - 421
Target Start/End: Complemental strand, 6139571 - 6139320
Alignment:
| Q |
170 |
atatggcaacacactatataattacaaattaaatactaacaattaatcatggaaaataaatccagaatatttgaaagtgaagtacattattaaacactaa |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6139571 |
atatggcaacacactatataattacaaattaaatactaacaattaatcatggaaaataaatccagaatatttgaaagtgaagtacattattaaacactaa |
6139472 |
T |
|
| Q |
270 |
attcatttatactaatgaaaaacaaaatataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcatta |
369 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6139471 |
attcatttatactaatgaaaaacaaaaaataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcatta |
6139372 |
T |
|
| Q |
370 |
gaagttgaaatgaaaatgtggttattaccgccaggacgagatggattctctg |
421 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6139371 |
gaagttgaaatgaaaatgcggttattaccgccaggacgagatggattctctg |
6139320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 6139749 - 6139591
Alignment:
| Q |
15 |
aatgttaaattcgtatttgactcatgaatgcaaaattaatcaacagaagatatagaaatctaacaatttaattatatgaatacaactaacgcatatgtta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6139749 |
aatgttaaattcgtatttgactcatgaatgcaaaattaatcaacagaagatatagaaatctaacaacttaattatatgaatacaactaacgcatatgtta |
6139650 |
T |
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| Q |
115 |
ttcttcatttttcattcgtcaatgtaatattaaatttacacttggagtgattggaatat |
173 |
Q |
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| T |
6139649 |
ttcttcatttttcattcgtcaatgtaatattaaatttacacttggagtgattggaatat |
6139591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 391
Target Start/End: Complemental strand, 6152315 - 6152228
Alignment:
| Q |
304 |
acaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatgaaaatgtggt |
391 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||||||||||| |||||| |
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| T |
6152315 |
acaagtaattaagaaagtatatatacctcaatcctgagcctgttcctctctggcctaagttcatgagaagttgaaatgaaattgtggt |
6152228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 305 - 384
Target Start/End: Complemental strand, 6126712 - 6126633
Alignment:
| Q |
305 |
caagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatgaaa |
384 |
Q |
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||||||| ||||||||||||||||||||| || |||| |||||||||| ||||||||||| |||||||||||||||| |
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| T |
6126712 |
caagtaactaagaaagtatatatacctcaaccatgagcatgttcctctctagcctaagttcatgagaagttgaaatgaaa |
6126633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 391
Target Start/End: Complemental strand, 6146216 - 6146042
Alignment:
| Q |
218 |
atggaaaataaatccagaatatttgaaagtgaagtacattattaaacactaaattcatttatactaatgaaaaacaaaat--ataatcacaagtaattaa |
315 |
Q |
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|||| ||||||||| |||| |||||||| ||||| |||| ||||||| | ||||||||||||||||| || |||| | ||| | ||||||| | | |
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| T |
6146216 |
atggtaaataaatcgagaaaatttgaaaatgaagcacatctttaaaca-tgaattcatttatactaatatcaaccaaagtcaatattatcaagtaactta |
6146118 |
T |
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| Q |
316 |
gaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatgaaaatgtggt |
391 |
Q |
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|||||||||| ||||||| ||||| | |||||||||| ||||||||||| |||||||||||| ||| |||||| |
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| T |
6146117 |
gaaagtatatgtacctcaaccctgtgcctgttcctctctggcctaagttcatgagaagttgaaattaaattgtggt |
6146042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 204 - 421
Target Start/End: Complemental strand, 25364333 - 25364117
Alignment:
| Q |
204 |
actaacaattaatcatggaaaataaatccagaatatttgaaagtgaagtacattattaaacactaaattcatttatactaatgaaaaacaaaatataatc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||| ||| ||| |||||| |
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| T |
25364333 |
actaacaattaatcatggaaaataaatccagaatatttgaaagtgaagcacattattaa-cactaaattcatttataccaatgaacaaccaaaaataatc |
25364235 |
T |
|
| Q |
304 |
acaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatgaaaatgtggttattaccgccag |
403 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
25364234 |
acaagtaattaagaaagcatatatacctcatccatgagagcgttcctctcttccctaagttcatcagaagttgaaatgaaaatgcggttattaccgccag |
25364135 |
T |
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| Q |
404 |
gacgagatggattctctg |
421 |
Q |
| |
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| ||| ||||||||||| |
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| T |
25364134 |
aaagagctggattctctg |
25364117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 25364390 - 25364356
Alignment:
| Q |
170 |
atatggcaacacactatataattacaaattaaata |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
25364390 |
atatggcaacacactatataattacaaattaaata |
25364356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 204 - 421
Target Start/End: Original strand, 7734 - 7954
Alignment:
| Q |
204 |
actaacaattaatcatggaaaata----aatccagaatatttgaaagtgaagtacattattaaacactaaattcatttatactaatgaaaaacaaaatat |
299 |
Q |
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|||||| ||||||||||||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| ||| || |
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| T |
7734 |
actaacgattaatcatggaaaatatataaatctagaatatttgaaagtgaagcacattattaa-cactaaattcatttatactaatgaacaaccaaaaat |
7832 |
T |
|
| Q |
300 |
aatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatgaaaatgtggttattaccg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||||| |
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| T |
7833 |
aatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctcccttccctaagttcatcagaagttgaaatgaaaatgcgcttattacca |
7932 |
T |
|
| Q |
400 |
ccaggacgagatggattctctg |
421 |
Q |
| |
|
|||||||||| ||||||||||| |
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| T |
7933 |
ccaggacgagctggattctctg |
7954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 204 - 407
Target Start/End: Original strand, 18315 - 18521
Alignment:
| Q |
204 |
actaacaattaatcatggaaaata----aatccagaatatttgaaagtgaagtacattattaaacactaaattcatttatactaatgaaaaacaaaatat |
299 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| ||| ||| || |
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| T |
18315 |
actaacaattaatcatggaaaatatataaatctagaatatttaaaagtgaagcacattattaa-cactaaattcatttatactaatgaacaaccaaaaat |
18413 |
T |
|
| Q |
300 |
aatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatgaaaatgtggttattaccg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||||| |
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| T |
18414 |
aatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctcccttccctaagttcatcagaagttgaaatgaaaatgcgcttattacca |
18513 |
T |
|
| Q |
400 |
ccaggacg |
407 |
Q |
| |
|
|||||||| |
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|
| T |
18514 |
ccaggacg |
18521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 7677 - 7711
Alignment:
| Q |
170 |
atatggcaacacactatataattacaaattaaata |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7677 |
atatggcaacacactatataattacaaattaaata |
7711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 204
Target Start/End: Original strand, 18231 - 18261
Alignment:
| Q |
174 |
ggcaacacactatataattacaaattaaata |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
18231 |
ggcaacacactatataattacaaattaaata |
18261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 421
Target Start/End: Original strand, 7917821 - 7917866
Alignment:
| Q |
376 |
gaaatgaaaatgtggttattaccgccaggacgagatggattctctg |
421 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||| ||||||||||| |
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| T |
7917821 |
gaaatgaaaatatcgttattaccgccagcacgagctggattctctg |
7917866 |
T |
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