View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14808_high_7 (Length: 420)

Name: NF14808_high_7
Description: NF14808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14808_high_7
NF14808_high_7
[»] chr4 (1 HSPs)
chr4 (1-297)||(45519200-45519495)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 45519495 - 45519200
Alignment:
Q  1 tgttcttgaattagtaggcaattttaaacaaatccattttgcaaattccagctaacatctaactgcttcaaggtcaaacttgaatgcaattattcaattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45519495 tgttcttgaattagtaggcaattttaaacaaatccattttgcaaattccagctaacatctaactgcttcaaggtcaaacttgaatgcaattattcaattg 45519396  T
Q  101 actctatgctagctccttttnnnnnnnnnttctattaacctgatctttccatggaagaaactttattacaccattacacttcacattttattgagaaaat 200  Q
    ||||||||||||||||||||         |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45519395 actctatgctagctccttttaaaaaaaa-ttctattaacttgatctttccatggaagaaactttattacaccattacacttcacattttattgagaaaat 45519297  T
Q  201 gttgaaaacaaaacttcactttccatgttaacttgtgatcataaaaacttcattcttcaaaacccatcaatggatgaacacatggtcaagtccaaaa 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45519296 gttgaaaacaaaacttcactttccatgttaacttgtgatcataaaaacttcattcttcaaaacccatcaatggatgaacacatggtcaagtccaaaa 45519200  T

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